Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq23987 86.0 8e-12 seq17792 86.0 8e-12 seq25900 82.4 1e-10 >seq23987 Length=1200 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 50336 TATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTC 50395 |||| ||| | || ||||||||||||||| || ||| | | |||||| || Sbjct 453 TATTCAATCGTCAGCCAACACTTCATAAAATGTCAATGATGGGACACTACGTTAAAGTTT 512 Query 50396 AACCAGTAAAAACATTTAAAATGAATTT-AGCTATGACTAAAGCATATAATGCTGATTTT 50454 ||| ||||||| |||||||| || | | || | | || |||||||||||| Sbjct 513 TGCCATGGTCAACATTTCGTATGAATTTGAGTTGTACCTCAC-CGTACAATGCTGATTTT 571 Query 50455 GATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAA 50508 || || ||||||||||||||||||||||| |||||| || | || ||||||| Sbjct 572 GACGGAGATGAAATGAATTTACATGTTCCACAATCACTTGAAACTCGTGCTGAA 625 >seq17792 Length=2801 Score = 86.0 bits (94), Expect = 8e-12 Identities = 126/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 50320 GATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGT 50379 || |||||| || |||| ||| | |||||||| || |||||| |||| || Sbjct 1527 GACGGTGATTTAGTTGTATTTAATCGTCAACCAACTCTGCATAAAATGAGTATGATGGGT 1468 Query 50380 TTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAGCTATGACTAAAGCA 50439 || ||||||| || ||| ||||||| ||||||||| | || | | Sbjct 1467 CATAGAGTTAAAGTTTTACCCTGGTCAACATTTCGTATGAATTTAAGTTGTACATCACCG 1408 Query 50440 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGA 50496 || ||||||||||||||||| |||||||||||||||||||| || || || |||||| Sbjct 1407 TACAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTACCACAGTC-TATGGA 1352 >seq25900 Length=2493 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 192986 TCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAA 193044 ||||| ||||| ||| |||| || ||||||||| ||| | |||| | ||||||||| Sbjct 1389 TCAGT-ACGTACACCACAAATTGGTGATAAATTTGCTTCACGCCATGGAC-AAAAAGGAA 1332 Query 193045 CTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAG 193104 | || || || || || || || ||||||||||||||| | ||| | ||| | Sbjct 1331 CATGCGGAATTATGTACCGTCAGGAGGATATGCCATTTACATGTGAAGGACTAACACCCG 1272 Query 193105 ATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTGCTA 193164 ||||||| |||||||| || ||||| || | ||||| ||| ||| | |||| Sbjct 1271 ATATTATAATTAATCCGCATGCCATTCCATCACGTATGACAATTGGTCATTTAATTGAAT 1212 Query 193165 CTGTTATGGGTAAATT 193180 | || ||||||||| Sbjct 1211 GTCTTCAGGGTAAATT 1196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628321089876480