Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value seq11842 82.4 8e-11 seq3345 82.4 8e-11 >seq11842 Length=2761 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 94570 GGGT-TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCC 94628 |||| ||||||||||||||||||||| ||| | ||| |||||||||||||||| |||||| Sbjct 1324 GGGTGTAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCGATCCCC 1265 Query 94629 CG 94630 || Sbjct 1264 CG 1263 >seq3345 Length=2014 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 94570 GGGT-TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCC 94628 |||| ||||||||||||||||||||| ||| | ||| |||||||||||||||| |||||| Sbjct 589 GGGTGTAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCGATCCCC 530 Query 94629 CG 94630 || Sbjct 529 CG 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494340292959240