Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12263 120 6e-22 seq15244 116 7e-21 seq22772 87.8 4e-12 >seq12263 Length=1580 Score = 120 bits (132), Expect = 6e-22 Identities = 210/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||||| | || ||| |||||| | |||||| | || ||||| || || Sbjct 1110 TGGTGGTACTATTTCTCAAAACTATTAGAATTTTGCGATACGTTTTTCTTCATTCTAAGA 1051 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 ||||| || || | | || ||||| || ||||||||| || |||||||| || Sbjct 1050 AAAAAAGAAAAACAATTAACATTCTTACATGTCTATCATCATAGCACAATGTTTACATTG 991 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAGCATTTTTCGGAGCTCAGTTGAAT 60334 | ||| | || ||||||||| || | | ||| | ||||| | ||| | | ||| Sbjct 990 TGGTGGATCGGTATTAAATGGGTTCCAAGTGGTTCAACATTTCTTCCAGCAATGGTTAAT 931 Query 60335 TCCTTAATCCATGTTATTATGTATACTTATTATGGTATGGCGGCGTGTGGACCTATGTTT 60394 || | || |||||| | |||||| | || |||||| | | || ||| |||| || Sbjct 930 TCAGTTATTCATGTTTTAATGTATTCGTACTATGGTTTATCAGCTCTTGGTCCTAGAATT 871 Query 60395 AAAAAGTATTTATGGTGGAAGCGTTATCTTACTATAATGCAATTGTTACAATTCCATATA 60454 || |||||||||||||||||| | ||| | || || ||| | ||||||| || | Sbjct 870 AATAAGTATTTATGGTGGAAGAGATATTTAACAATTGCACAACTCATACAATTTTTTACA 811 Query 60455 GCTATA 60460 ||| || Sbjct 810 GCTTTA 805 >seq15244 Length=2162 Score = 116 bits (128), Expect = 7e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 |||||||||| | | |||||||||||| || || ||||| |||||||||||||| |||| Sbjct 1 CAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTT 60 Query 82732 TTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACG 82791 | |||||||| || ||||| ||||| || || | || || ||||| ||||| | | Sbjct 61 TGACATTTTCGATAGTATCGGAGGGTTCGACCTCAAGGGTGATGGTCTTCCCTGTGAGAG 120 Query 82792 TCTTTACAAATATCTGCAT 82810 | || ||||| |||||||| Sbjct 121 TTTTCACAAAAATCTGCAT 139 >seq22772 Length=1572 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 |||||| |||||||| ||| | || ||||| |||| || ||||| ||| || | | || Sbjct 1325 AGGTTGCATGTGGTCAATTGGAGGTTTACACGATCAAGGTTGGAAGGAACGATCAGTTTT 1266 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 ||| || || | |||||||| ||| |||| | ||| | ||||||||||||| ||| || Sbjct 1265 TGGTAAAATTCGTTATATGAACTATCAGGGATGTAAAAGAAAATTTGATGTTAATGCCTT 1206 Query 198635 T 198635 | Sbjct 1205 T 1205 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 |||||| ||| |||| ||| | || ||||| |||| || ||||| ||| || | | || Sbjct 1497 AGGTTGCATGGGGTCAATTGGGGGTTTACACGATCAAGGTTGGAAGGAACGAACAGTTTT 1438 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 ||| || || | |||||||| ||| |||| | ||| | ||||||||||||| ||| || Sbjct 1437 TGGTAAAATTCGTTATATGAACTATCAGGGATGTAAAAGAAAATTTGATGTTAATGCCTT 1378 Query 198635 T 198635 | Sbjct 1377 T 1377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981490782125877