Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq12263 105 1e-17 >seq12263 Length=1580 Score = 105 bits (116), Expect = 1e-17 Identities = 182/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||||| | || ||| |||||| | ||||| | || ||||| || || Sbjct 1110 TGGTGGTACTATTTCTCAAAACTATTAGAATTTTGCGATACGTTTTTCTTCATTCTAAGA 1051 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCT-ACACGTATATCATCATTTTACTATGTTTACTTT 58503 ||||| || || ||| | |||| ||| || ||||||||| || |||||||| || Sbjct 1050 AAAAAAGAAAAACAA-TTAACATTCTTACATGTCTATCATCATAGCACAATGTTTACATT 992 Query 58504 AGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGCTCAGTTGAA 58563 | ||| | |||||||||||| || || | ||| ||||| | || | | || Sbjct 991 GTGGTGGATCGGTATTAAATGGGTTCCAAGTGGTTCAACATTTCTTCCAGCAATGGTTAA 932 Query 58564 TTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATGGCGGCGTGTGGACATATGTT 58623 ||| |||| |||||| | |||||| || |||||| | | || ||| | || | Sbjct 931 TTCAGTTATTCATGTTTTAATGTATTCGTACTATGGTTTATCAGCTCTTGGTCCTAGAAT 872 Query 58624 TAAAAAGTATTTATGGTGGAAG 58645 ||| |||||||||||||||||| Sbjct 871 TAATAAGTATTTATGGTGGAAG 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903109200928480