Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq7714 98.7 1e-15 seq24453 96.9 5e-15 seq10721 96.9 5e-15 seq3803 96.9 5e-15 >seq7714 Length=2501 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11724 ACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTT 11782 ||| |||||||||||||||||||||| |||| |||| ||||| | ||||||||| ||||| Sbjct 2194 ACCAAGTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTT 2135 Query 11783 CGATTCCCCGACGAGGAGG 11801 |||||||| |||| ||||| Sbjct 2134 CGATTCCCTGACGGGGAGG 2116 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 2188 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 2129 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 2128 CCTGACGGGGAG 2117 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||| ||||||||| | |||| |||||||| | ||||||| Sbjct 2117 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2176 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 2177 TACTAACGAGGACTT 2191 >seq24453 Length=1394 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||||||||||||||||| |||| |||| ||||| | ||||||||| ||||||||| Sbjct 586 AGTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGAT 645 Query 11787 TCCCCGACGAGGAGG 11801 |||| |||| ||||| Sbjct 646 TCCCTGACGGGGAGG 660 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||||||||||||||||| |||| |||| ||||| | ||||||||| ||||||||| Sbjct 1128 AGTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGAT 1187 Query 11787 TCCCCGACGAGGAGG 11801 |||| |||| ||||| Sbjct 1188 TCCCTGACGGGGAGG 1202 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 588 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 647 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 648 CCTGACGGGGAG 659 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 1130 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 1189 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 1190 CCTGACGGGGAG 1201 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||| ||||||||| | |||| |||||||| | ||||||| Sbjct 659 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 600 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 599 TACTAACGAGGACTT 585 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||| ||||||||| | |||| |||||||| | ||||||| Sbjct 1201 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1142 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 1141 TACTAACGAGGACTT 1127 >seq10721 Length=1025 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||||||||||||||||| |||| |||| ||||| | ||||||||| ||||||||| Sbjct 484 AGTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGAT 543 Query 11787 TCCCCGACGAGGAGG 11801 |||| |||| ||||| Sbjct 544 TCCCTGACGGGGAGG 558 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 486 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 545 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 546 CCTGACGGGGAG 557 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||| ||||||||| | |||| |||||||| | ||||||| Sbjct 557 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 498 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 497 TACTAACGAGGACTT 483 >seq3803 Length=1114 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||||||||||||||||| |||| |||| ||||| | ||||||||| ||||||||| Sbjct 597 AGTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGAT 538 Query 11787 TCCCCGACGAGGAGG 11801 |||| |||| ||||| Sbjct 537 TCCCTGACGGGGAGG 523 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 595 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 536 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 535 CCTGACGGGGAG 524 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||| ||||||||| | |||| |||||||| | ||||||| Sbjct 524 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 583 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 584 TACTAACGAGGACTT 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652626562143920