Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq17792 140 8e-28 seq23987 102 2e-16 seq3331 86.0 1e-11 >seq17792 Length=2801 Score = 140 bits (154), Expect = 8e-28 Identities = 407/612 (67%), Gaps = 26/612 (4%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC--AG-GCA 304942 ||||| | |||| |||||||||| | |||||||| || | || ||||| || ||| Sbjct 1953 TTACAGTTTCATGTTGCAACATTTGTTGATAATGATATGCCGGG---TATGCCAAGAGCA 1897 Query 304943 TCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 |||| |||||| | ||| | || | || | ||| | || |||||||| || Sbjct 1896 ATGCAAAAATCTGGTAAACCACTTAAAGCAATAAAATCACGTTTGAAGGGTAAAGAAGGA 1837 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACA 305062 |||||||| |||||| ||||||||||||||||||||||| ||| | | || || ||| Sbjct 1836 CGTATTCGTGGTAATTTAATGGGAAAACGTGTTGATTTTTCAGCACGTACCGTTATTACA 1777 Query 305063 CCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACT 305121 || ||| | || ||| || || || || | || ||||| |||||| ||| | Sbjct 1776 CCAGATCCA-AATTTACGTATTGATCAAGTTGGTGTTCCTCGGTCAATTGCACAAAATTT 1718 Query 305122 AACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAAACATTTGAGACGTTGTGTTCTTA 305180 |||||||||||| |||| || | || |||| | | || | || ||| | Sbjct 1717 AACATTTCCAGAACTTGTTACACCATTCAA-TATTGATCGAATGCAAGATTTAGTTAGAA 1659 Query 305181 ATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAGAAGACAA 305240 || ||| ||||||| |||||| | || | | | || | || Sbjct 1658 GAGGTAATTCACAGTATCCTGGTGCTAAATATATTGTT-----CGTGATAACGGTGAACG 1604 Query 305241 TATCTTTGAACCATATCGATTTAAAAC-AATTCAGTAAAATGCTTGAAAT-TAATGATAT 305298 ||| | | || || || ||||| || | | | | || || | | | | ||| Sbjct 1603 TATTGATTTAAGATTTC-ATCCAAAACCAAGTGATTTACAT--TTACAGTGTGGTTATAA 1547 Query 305299 TGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCA 305358 ||| | ||||| |||| ||||| ||| | || ||| | |||||| | ||||| Sbjct 1546 AGTTGAACGGCATTTACGTGACGGTGATTTAGTTGTATTTAATCGTCAACCAACTCTGCA 1487 Query 305359 TAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA 305418 ||||||| |||||||| ||||| ||| ||||| ||| | | | |||||||| | || Sbjct 1486 TAAAATGAGTATGATGGGTCATAGAGTTAAAGTTTTACCCTGGTCAACATTTCGTATGAA 1427 Query 305419 TGTAAGTGCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCA 305475 | ||||| ||||| || || ||||| |||||||||||||||||||||||| | || Sbjct 1426 TTTAAGT---TGTACATCACCGTACAATGCTGATTTTGATGGAGATGAAATGAATTTACA 1370 Query 305476 TGTACCTCAATC 305487 |||||| || || Sbjct 1369 TGTACCACAGTC 1358 >seq23987 Length=1200 Score = 102 bits (112), Expect = 2e-16 Identities = 121/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 305329 GGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAA 305388 |||| | |||||| | || ||| |||| ||||||||||| ||||||| || | || || Sbjct 448 GGTTGTATTCAATCGTCAGCCAACACTTCATAAAATGTCAATGATGGGACACTACGTTAA 507 Query 305389 AGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA---CGCCTTATAATGC 305445 ||| || | | | |||||||| | ||| | || ||||| | || || ||||| Sbjct 508 AGTTTTGCCATGGTCAACATTTCGTATGAATTTGAG---TTGTACCTCACCGTACAATGC 564 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||| ||||||||||||||| | ||||| || |||||| Sbjct 565 TGATTTTGACGGAGATGAAATGAATTTACATGTTCCACAATCA 607 >seq3331 Length=1368 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/105 (80%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 167238 ATCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGT 167296 |||||| ||||||||||| || || || | | || |||||||| || ||||||| ||| Sbjct 1255 ATCATT---CCACCAGCATTGTCAAACTC-TCCACAGTAATTTGGAGCAGAAAATAAAGT 1310 Query 167297 AACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 ||||||| || || ||| ||||||||||||||||||||||| Sbjct 1311 TACTAATTGTCGCTTAGCAAAAAATTCATAACCATCTTCAACAAC 1355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186406144899023