Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq8080 98.7 9e-16 seq6464 93.3 4e-14 >seq8080 Length=1533 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 117677 AACTGATAGGTTATTATCGTTCGCCGATTGGCC-AAAGTATTTATTTCaaaaaaaaaaTG 117735 ||||||||| ||| ||||| || || ||||| ||| | | | |||||| ||| | Sbjct 1268 AACTGATAGATTAAGATCGTATGCTGACTGGCCGAAAACAATGAAA-CAAAAACCAAAAG 1210 Query 117736 AATTAAGTGCAGCAGGATTTTATTATTTGGGTGTAGGTGATCAAGTAAAATGTTTTAGTT 117795 ||||||||| || |||| || ||| | || ||||||| | || ||||||||||||| Sbjct 1209 AATTAAGTGATGCTGGATATTTCTATATAGGAAAAGGTGATAAGGTTAAATGTTTTAGTT 1150 Query 117796 GTGGTGGAGGCCTAAAAGATTGGGAGTTGATCGACA--ACGCATGGGTAGAACATGCAA 117852 |||||||||| ||| ||||||||| || || | | |||||| | ||||||||| Sbjct 1149 GTGGTGGAGGTTTAAGAGATTGGGA--AGAAGGAGATGATCCATGGGAACAACATGCAA 1093 >seq6464 Length=7159 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 117677 AACTGATAGGTTATTATCGTTCGCCGATTGGCC-AAAGTATTTATTTCaaaaaaaaaaTG 117735 ||||||||| ||| ||||| || || ||||| ||| | | | |||||| ||| | Sbjct 6206 AACTGATAGATTAAGATCGTATGCTGACTGGCCGAAAACAATGAAA-CAAAAACCAAAAG 6148 Query 117736 AATTAAGTGCAGCAGGATTTTATTATTTGGGTGTAGGTGATCAAGTAAAATGTTTTAGTT 117795 ||||||||| || |||| || ||| | || ||||||| | || ||||||||||||| Sbjct 6147 AATTAAGTGATGCTGGATATTTCTATATAGGAAAAGGTGATAAGGTTAAATGTTTTAGTT 6088 Query 117796 GTGGTGGAGGCCTAAAAGATTGGGA 117820 ||||||| || ||| ||||||||| Sbjct 6087 GTGGTGGCGGTTTAAGAGATTGGGA 6063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465968980305920