Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq24992 131 2e-25 >seq24992 Length=2139 Score = 131 bits (144), Expect = 2e-25 Identities = 204/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 161408 GCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCC 161467 |||||||| || |||||||||||||||| ||||| ||||| |||| ||| || Sbjct 1187 GCTAAACTGTACGGATATTGGATTGTAATTAACTATAGAGAAGCTTATAACATGTTTTCC 1128 Query 161468 AGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGT 161527 ||| ||| ||| ||||||| ||||| ||||| || | ||||| | |||||||| | Sbjct 1127 TGTAATGGAATTTTATTCAATCATGAATCACCTAGAAGAGGTGAAAACTTCGTAACTAGA 1068 Query 161528 AAGATTACTAGGGGACTATCCCGTATTAGTACAGGA--CTACAGGATTGTCTATACCTAG 161585 || ||||| || | | | ||| | ||| | || || ||| | | | | Sbjct 1067 AAAATTACAAGATCAGTGGCAAAAATT--CATTGGAATCAACTTGAATGTTTTGAATTGG 1010 Query 161586 GTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGT 161645 ||||| || | || | | |||| ||||| ||||| | || ||||| || ||||||||| Sbjct 1009 GTAATTTAGATTCTAAAAGAGACTGGGGACATGCCAAGGATTATGTTGAAGCTATGTGGA 950 Query 161646 TGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAA 161695 ||||| | ||||| |||| ||| | |||| ||| ||||| || |||||| Sbjct 949 TGATGCTTCAACAAGAAAAACCTCAAGACTTTGTAATTGCAACTGGTAAA 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729685593658840