Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22036 264 9e-66 seq25900 89.7 4e-13 >seq22036 Length=1417 Score = 264 bits (292), Expect = 9e-66 Identities = 408/580 (70%), Gaps = 12/580 (2%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 ||| || || ||| |||||| || || ||||||||| | ||||| | || ||||| Sbjct 675 AATCGGTGGTTTGGATAAAGAATTCAATGCAATCTTTCGACGTGCATTCGCTTCACGTGT 616 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 |||| | |||| | || |||||||||| || ||||| ||| ||| |||| | | Sbjct 615 TTTTCCACCAGAAATTGTTGAACAATTGGGTTGCAAACACGTTAAAGGAATTTTATTATT 556 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTAC 19418 ||| ||||||||| || ||||| ||||| || || || | ||| | ||| | | Sbjct 555 TGGACCACCGGGTACCGGTAAAACTTTAATGGCTCGACAAATCGGTACAATGTTAAATGC 496 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 | | |||| |||||||| |||||||| | | || |||||||||| ||| | || Sbjct 495 CAGAGAACCA---AAAATTGTTAATGGTCCACAGGTATTGGATAAATATGTTGGTGAGTC 439 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 |||| |||| | ||| | | |||||||| |||||||| ||| | |||||||| || | Sbjct 438 TGAAGCAAATATTCGAAGACTTTTTGCTGATGCTGAAGAGGAAGAGAAACGTTTGGGACC 379 Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 || ||| | | || || || || | |||||| | || ||||| ||||| |||||| Sbjct 378 AAACAGTGGTCTTCATATAATTATTTTTGATGAAATCGATGCAATTTGTAAATCAAGAGG 319 Query 19599 TTC---TGGTGTAAA---TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 ||| ||||| || ||| || ||||| |||||||| |||||||| | || ||| | Sbjct 318 TTCCGTTGGTGGTAACAGTGGTGTTCATGATACTGTTGTTAATCAACTTTTATCCAAAAT 259 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712 || ||||| | || | ||||||||||| ||||||| ||||| ||| ||| || | Sbjct 258 CGATGGTGTCGAACAGTTAAATAATATTTTGATTATTGGTATGACAAATCGACGAGATAT 199 Query 19713 AATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACC 19772 || || || || || || || ||||| |||||| || | || ||||||| ||||| Sbjct 198 GATTGATGAGGCTTTGTTGCGTCCGGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACC 139 Query 19773 CGATGAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812 ||||| |||||| |||| ||||| || |||||| Sbjct 138 AAATGAACAGGGACGTCATCAAATCTTAAATATTCATACA 99 >seq25900 Length=2493 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| ||||||||||| |||| |||||||||||||| || | || || || || || Sbjct 1228 AATTGTCATACGTGATGGAATGGCATGCGGATTAATTATAATATCGGGTGTTAGTCCTTC 1287 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTTTGAGCGGT 115150 ||| || ||||| || | |||| |||||| ||||| || ||||||||||| | Sbjct 1288 ACATGTAAATGGCATATCCTCCTGACGGTACATAATTCCGCATGTTCCTTTTTGTCCATG 1347 Query 115151 AAACGATGCAAATTTATCACCAAT 115174 || ||||||||||||||||| Sbjct 1348 GCGTGAAGCAAATTTATCACCAAT 1371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397326457041715