Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq24992 109 7e-19 >seq24992 Length=2139 Score = 109 bits (120), Expect = 7e-19 Identities = 171/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 9321 GGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATT 9380 ||||| | ||||| ||||||||||| ||| |||||| | |||| || || | || ||| Sbjct 1121 GGAATTTTATTCAATCATGAATCACCTAGAAGAGGTGAAAACTTCGTAACTAGAAAAATT 1062 Query 9381 ACC-GAGG-GTATCAAACAAATCAT--GAAGGGTGAAAAGGAGTTCATTGAATTGGGTAA 9436 || || || |||| || |||| ||| | || || | ||||||||||||| Sbjct 1061 ACAAGATCAGTGGCAAA-AATTCATTGGAA---TCAACTTGAATGTTTTGAATTGGGTAA 1006 Query 9437 CATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCAT 9496 || | | | ||||| ||||| || || ||||| |||||||||||||||||| | || Sbjct 1005 TTTAGATTCTAAAAGAGACTGGGGACATGCCAAGGATTATGTTGAAGCTATGTGGATGAT 946 Query 9497 GCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 |||||||||||| || | | || | |||| | ||||| ||| | || || ||||| Sbjct 945 GCTTCAACAAGAAAAACCTCAAGACTTTGTAATTGCAACTGGTAAAACTCA--CAGTG 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627822056752800