Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1523 93.3 2e-14 >seq1523 Length=2040 Score = 93.3 bits (102), Expect = 2e-14 Identities = 249/369 (67%), Gaps = 20/369 (5%) Strand=Plus/Plus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 || || |||||||| | ||| ||||| | ||||||||| |||||||||||| ||| | Sbjct 1237 CCGGTACCAATACCTTCTGAACCATTAACTAAAATCATTGGAATAATTGGTATATACCAA 1296 Query 64952 ATAGGCTCAACAATGAGACCATCATCA--TCCAAATACTTCAAAATGGCATCATCCTCTT 65009 | || |||| | || |||||| | | || || | ||||| |||||| | | Sbjct 1297 ACTGGTTCAATTCTTTGATTATCATCTGTTTGATATGCTA-ACAATGG-ATCATCATGTG 1354 Query 65010 TTGGAAATATAGAACGAGTTATTTTATTCA--ATTGAGTATAAATATATCTTTCGGATGC 65067 |||||||| ||| |||| | || |||| || ||||||| | ||| Sbjct 1355 GATGAAATATAAGACGTGTTAATGGTGACATCATTG--TAAAAATATAACGA--GGACTA 1410 Query 65068 G---TGGTCTTGTC--CAGTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTA 65122 | || ||| | || | || ||| ||||| |||||| |||| |||||||||||| Sbjct 1411 GCACTGTCCTTACCACCACATAATCTTGTACCAAATTGACCACTTGGTATTAATAAATTA 1470 Query 65123 ATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACT--CG 65180 |||||||| ||||| | ||||||| || | | ||||| | || ||| | Sbjct 1471 ATATTGTTACTACCAACATAATTCTGTGCAAGATTAACAATTGTTCCA--CAAAGTGATA 1528 Query 65181 CTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTA 65240 ||||||||||||||||| |||| ||||| | | ||| ||||| |||||||| | Sbjct 1529 CTTCACCGTGATGATATGCTGACATTTCAGCAATTGAACCAGCCAATTGTGCAACTTTAA 1588 Query 65241 TTTC-CGTT 65248 ||| |||| Sbjct 1589 CTTCACGTT 1597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235603184743950