Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15244 86.0 4e-12 >seq15244 Length=2162 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || ||||| ||||| || || || ||||| || || || || || Sbjct 142 AATATGCAGATTTTTGTGAAAACTCTCACAGGGAAGACCATCACCCTTGAGGTCGAACCC 83 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| | |||| | ||| || ||| || ||||||||| | || |||||| Sbjct 82 TCCGATACTATCGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATCCCACCAGAT 23 Query 23728 CAACAGCGTTTAATATTTGC 23747 ||||| ||||| || ||||| Sbjct 22 CAACAACGTTTGATCTTTGC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337899432425444