Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12311 143 4e-29 >seq12311 Length=1845 Score = 143 bits (158), Expect = 4e-29 Identities = 332/495 (67%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 78128 ATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTT 78187 ||| || || | | |||| |||| ||||| || |||||| | || ||| || || || Sbjct 2 ATACATAGCAAAAGCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATT 61 Query 78188 ATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 |||| ||||||| | |||||| | | ||| || || | ||||| ||||||| ||||| Sbjct 62 ATTAAAAACTCTAAGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATA 121 Query 78248 ACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307 |||| | || |||| | | ||| || || || ||||| || || || || Sbjct 122 TGTTCCCTTAGCACGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGAT 181 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAA 78366 || ||| || | | | || || || || || ||||| || || ||| ||||| Sbjct 182 TAAAGCACATTTTGTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAA 241 Query 78367 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATG 78426 ||| ||||| ||||||||| ||||| ||| | || |||| ||||| || | Sbjct 242 -AAGGAAACATGAAGACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAG 300 Query 78427 CATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC- 78485 |||| || || || | || || | || ||| || |||| || ||| ||| || | Sbjct 301 CATGAGTGAAATATCTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTT 360 Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545 || | |||||||| || ||||| | ||||| |||||| || || | |||||| | | Sbjct 361 CACCG-TGAATTCCAACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAATTTGT 419 Query 78546 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 78605 | || ||||| || | || || ||||| || ||||||||||| || ||||| | Sbjct 420 TCGTTAATTTTTAAGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCA 479 Query 78606 AAGTCTCTCTCGTAA 78620 || || | |||||| Sbjct 480 AAATCACGATCGTAA 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694436580903520