Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12311 176 6e-39 >seq12311 Length=1845 Score = 176 bits (194), Expect = 6e-39 Identities = 339/495 (68%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 ||| || || | | | || |||| ||||| || |||||| | || ||| || || || Sbjct 2 ATACATAGCAAAAGCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATT 61 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||| ||||||| | |||||| | | || || || ||||||| ||||||| ||||| Sbjct 62 ATTAAAAACTCTAAGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATA 121 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 |||| ||||||| | | |||| || || || ||||| || ||| ||||| Sbjct 122 TGTTCCCTTAGCACGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGAT 181 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAA 76961 || |||||| | | | || ||| || || || |||||||| || ||| ||||| Sbjct 182 TAAAGCACATTTTGTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAA 241 Query 76962 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 ||| ||||| ||||||||| ||||| ||| | || || | || || || | Sbjct 242 -AAGGAAACATGAAGACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAG 300 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATA-TCC 77080 |||||||||| || | || || | || ||| || |||| || || |||| ||| | Sbjct 301 CATGAGTGAAATATCTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTT 360 Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTA 77140 || | |||||||| ||||| || | ||||| |||||| || || ||||| ||| | | Sbjct 361 CACCG-TGAATTCCAACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAATTTGT 419 Query 77141 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 77200 | || ||||| || | || || ||||| || ||||||||||| || ||||| | Sbjct 420 TCGTTAATTTTTAAGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCA 479 Query 77201 AAGTCTCTTTCGTAA 77215 || || | |||||| Sbjct 480 AAATCACGATCGTAA 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712696074941760