Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq15244 109 1e-18 seq24992 100 6e-16 >seq15244 Length=2162 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||||||||||||||| || || ||||| || || ||||| ||||| ||||| Sbjct 3 GCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTTTG 62 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | |||||||| || || | |||||| || || ||||| ||||| || || | ||| Sbjct 63 ACATTTTCGATAGTATCGGAGGGTTCGACCTCAAGGGTGATGGTCTTCCCTGTGAGAGTT 122 Query 283083 TTAACGAATATCTGCATTTT 283102 || || || |||||||| || Sbjct 123 TTCACAAAAATCTGCATATT 142 >seq24992 Length=2139 Score = 100 bits (110), Expect = 6e-16 Identities = 193/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 44089 TATTGGATTTGTAAA-AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTG 44147 ||||||||| |||| || ||| | || | ||| ||||| |||||| |||| Sbjct 1172 TATTGGATT-GTAATTAACTATAGAGAAGCTTATAACATGTTTTCCTGTAATGGAATTTT 1114 Query 44148 TTTCAATCACGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGC 44207 |||||||| ||| || | |||||| | | ||||| ||| | ||||| || | | | Sbjct 1113 ATTCAATCATGAATCACCTAGAAGAGGTGAAAACTTCGTAACTAGAAAAATTACAAGATC 1054 Query 44208 GGTTGCGAATATTTTCAACGGGACAGAAAAATGCATGTATCTA----GGAAACATAGACT 44263 || || || ||| | ||| | || || |||| | | || || |||| | Sbjct 1053 AGTGGCAAAAATTC---ATTGGA-ATCAACTTGAATGTTTTGAATTGGGTAATTTAGATT 998 Query 44264 CTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAAC 44323 |||||||||| |||||| ||||| ||||||||| ||||| |||||| ||||| | |||| Sbjct 997 CTAAAAGAGACTGGGGACATGCCAAGGATTATGTTGAAGCTATGTGGATGATGCTTCAAC 938 Query 44324 AAGACAGGTCAGACGACTACGTTATTGCAACTGGAAAGAC 44363 |||| | | | |||| || ||||||||||| || || Sbjct 937 AAGAAAAACCTCAAGACTTTGTAATTGCAACTGGTAAAAC 898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046380540373922