Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq22036 154 2e-32 >seq22036 Length=1417 Score = 154 bits (170), Expect = 2e-32 Identities = 400/609 (66%), Gaps = 22/609 (4%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| |||||| |||| |||| ||||| ||||| | |||||| || | | |||||| Sbjct 109 TTTAAGATTTGATGACGTCCCTGTTCATTTGGTAAACTAATTTCCATTTGTACTTCCAAA 168 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || || | || || || || ||||| | || ||| || |||||||| || || Sbjct 169 CGACCCGGACGCAACAAAGCCTCATCAATCATATCTCGTCGATTTGTCATACCAATAATC 228 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 ||||| || ||||| ||| ||||| || ||||| || || | |||||| || || | Sbjct 229 AAAATATTATTTAACTGTTCGACACCATCGATTTTGGATAAAAGTTGATTAACAACAGTA 288 Query 156051 TCGTGCGTGGC---GTTATCACCG---------CGTTTTTTACACAGAGCATCTATTTCA 156098 || || | |||| |||| | | |||||| | ||||| |||||| Sbjct 289 TCATGAACACCACTGTTACCACCAACGGAACCTCTTGATTTACAAATTGCATCGATTTCA 348 Query 156099 TCGAAGACGATAACGTGTAATCCGCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCC 156158 || || | || | || | || ||| | ||||| ||| Sbjct 349 TCAAAAATAATTATATGAAGACCACTGTTTGGTCCCAAACGTTTCTCTTCCTCTTCAGCA 408 Query 156159 TCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCA 156218 || ||| | || || | || ||||| || ||||| |||||||| | |||| | Sbjct 409 TCAGCAAAAAGTCTTCGAATATTTGCTTCAGACTCACCAACATATTTATCCAATACCTGT 468 Query 156219 GGACCGTTAACTATTTTGACGGGTCG-TG--ATTTAAAAGCTTG-AGCGATACAGCGAGC 156274 ||||| ||||| ||||| || || || |||||| | ||| | |||| ||||| Sbjct 469 GGACCATTAACAATTTTT--GGTTCTCTGGCATTTAACA--TTGTACCGATTTGTCGAGC 524 Query 156275 CATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACA 156334 |||||| ||||||||| || || ||||| |||| || | |||||| | ||||| || Sbjct 525 CATTAAAGTTTTACCGGTACCCGGTGGTCCAAATAATAAAATTCCTTTAACGTGTTTGCA 584 Query 156335 ACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAAT 156394 ||| |||| |||| |||||| |||| | ||||| ||||| | |||||| || Sbjct 585 ACCCAATTGTTCAACAATTTCTGGTGGAAAAACACGTGAAGCGAATGCACGTCGAAAGAT 644 Query 156395 GAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAATTT--ATA 156452 | |||||||||||||| || || | ||||||| | |||| ||| | | || Sbjct 645 TGCATTGAATTCTTTATCCAAACCACCGATTCCCATTTTACCGAAATCCCAGTCTGGATT 704 Query 156453 GATATTTGA 156461 |||| |||| Sbjct 705 GATAATTGA 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666852205099080