Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq34 230 3e-55 seq56 131 2e-25 >seq34 Length=2688268 Score = 230 bits (254), Expect = 3e-55 Identities = 399/577 (69%), Gaps = 5/577 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || | | ||||| ||| ||| || || ||||| ||||||| || ||||| | Sbjct 1149186 CCTCATCGCGAGAAATTAGTTCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCT 1149245 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||||||||||| ||||| ||| |||||||||||||| || || ||||| | Sbjct 1149246 TCAACCAAAATATGGCAGCAAAACTACCACTGAAGAAAATTCCTTCAACAGCTGCAAAAG 1149305 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 24333 | |||| || || || | || || | ||| ||||| || |||||| | | Sbjct 1149306 CTATAACTCGCTCAGCAAATGTAGCACTCTTATGACTGATCCAGTTCATAGCCCAGTTAG 1149365 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 24393 | ||||| | |||||||| | || || || ||||| || | |||| | | | Sbjct 1149366 CTTTCTTGGTAACACAAGGTAGAGTTTCAATTGCATTGAACAAGTAGTCCCTCTGAGATG 1149425 Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 ||| ||| || |||||||| | ||| ||||||||| || || | ||||| |||| Sbjct 1149426 GATCAGTAATGTAGGTATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGG 1149485 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 | | ||| || || ||||| || | |||||| || | || ||||| | ||||| | Sbjct 1149486 CTACTTGGAAGCCATAGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCT 1149545 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | | | ||||||||| || || || ||| ||| ||||| || || |||||||| | Sbjct 1149546 CAACGAGATTTTCATTGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAA 1149605 Query 24574 TAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCC 24632 |||||| ||| |||| || || | || |||||| | ||||| || |||| || Sbjct 1149606 TAAAATGTTTCTCGT-TGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCT 1149664 Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 |||||||| || ||||||||||| ||||| || || || ||||| | ||| || ||| | Sbjct 1149665 ACTTCTTCGACCGTCCAAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCAGGC 1149724 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||||||| ||||| || || || | | ||||||| Sbjct 1149725 CATTGAATGGGAAAGATCACGAAACGAGAAGGATTTT 1149761 >seq56 Length=4197193 Score = 131 bits (144), Expect = 2e-25 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 53078 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 53137 ||||| |||||| || || |||| ||| | | ||| || || || || | | ||| Sbjct 1121853 ATAATTTCATTCTTCATGTCTTCATCCCAAAGATCTCTTTCAGTCAAGTCTTTCAAAAGA 1121794 Query 53138 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 53197 || ||||| || | ||| ||||||||||| || ||||| || | |||||||||||||| Sbjct 1121793 TGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCTTCGTGAATAAATATTACTGGTG 1121734 Query 53198 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 53257 || || || | ||| || |||||||| | ||||| || || |||||||| ||||| ||| Sbjct 1121733 TAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGCTGTCGATGCAGTAGGCATTGGT 1121674 Query 53258 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 53317 || | | ||| |||||| | || ||| ||||| |||| | || | ||||| Sbjct 1121673 GCAAGAAGTAATGAATTTCTCACTCCATATTGAGCAATTTTTGCTTTCAAAGCTGCCCAA 1121614 Query 53318 TTCCAAAGAT 53327 | ||| |||| Sbjct 1121613 TCCCAGAGAT 1121604 Score = 111 bits (122), Expect = 2e-19 Identities = 263/398 (66%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| || || || ||||| || ||| | | ||| ||| || ||||| ||||| | Sbjct 1121225 TACCAATGGGCCTGTGTCTGAAGTTGGAGTTCTTAGCCTCTTTGATGGGATAGTAATTGA 1121166 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 | ||||| || ||| | |||||| | || ||| | || || |||| ||| | | Sbjct 1121165 TGTCTATTATCCTATCTAAATTTCTGGTAGCAACCTTGGCAACTTCTTTCAATTTCATGA 1121106 Query 53670 AATCAAAT---------TGTCCATCTATT---ACAAACATGTTCAATGCAATAGATGCCA 53717 | ||| || | | || |||| |||||||| || | ||||| ||||||| Sbjct 1121105 AGTCATATGTGCGTTGATTTGGATTTATTTGGACAAACATATTAACAGCAATTGATGCCA 1121046 Query 53718 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 53777 ||||||||| || || |||| || | || |||| | |||||| || | ||||| Sbjct 1121045 AATTACAAACTGCCACTTCATCAGGTGATGAGTACTGTACAACCTCAGTACATAAATTAC 1120986 Query 53778 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 ||| |||| || || |||||||||||||| || ||||| ||||| || || | Sbjct 1120985 TACTTCTGATTGTGCCCAAATTTTGTTGATTGGATTTACGATTACAAGCATCTTTGTATA 1120926 Query 53838 GAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAG 53897 ||| |||| || |||||||| | || || | || ||| |||| | |||||| Sbjct 1120925 ACATGTATGGTGTTCCAGTTTCTACTTGTGACATCAAAACAGCTGTCCATAAATCACGAG 1120866 Query 53898 CCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 53935 | | ||| |||||| | |||||| ||||||| Sbjct 1120865 CATCAATTTGTCGTTTGTAACGTTTTTCTTCTTCGTAT 1120828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || |||||||| ||||| ||||| || || | | ||| || | |||||| ||||| | Sbjct 1120525 TTACCTGTATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGA 1120466 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || || | | | |||| |||| || || ||||| || || | || | || |||||| Sbjct 1120465 TACATTGCAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTA 1120406 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 ||||| ||||| ||||| |||| | |||||| || | ||||| || |||| Sbjct 1120405 TTATACACTCTTAACATAGGAACTAAACCATTAGAAACTCCATTTGTTCCGG 1120354 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 52922 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 52981 || ||||| | ||| | ||||||| |||||| ||||| ||||| || |||||||||||| Sbjct 1122095 GCCATATGTACATTGAGAGATTGAGATTGATCAATGAAAGCTCCTCTATCTGCAGCCATT 1122036 Query 52982 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 53041 || | || |||||||| | |||||||||| ||| ||||| | | | || | ||| || Sbjct 1122035 TTCAAAATAGTCTTTTGGGATATTTCCCAAACAGTCTTATATAGTTGTTTCAGATCGTCG 1121976 Query 53042 GG 53043 || Sbjct 1121975 GG 1121974 Score = 91.5 bits (100), Expect = 2e-13 Identities = 186/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA-GGAGAAGCGTGCGTAAA 54462 || |||||||| || || | ||| | || | | | ||| | || ||||| ||||| || Sbjct 1120155 CTTGACATTTGTTGGCGTCCAGTACAAGC-TGAGAAAAGTGATGGTGAAGCATGCGTGAA 1120097 Query 54463 CCATTTTTCAGAAA-GTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 | || || | |||| ||||| || || ||| || || | || || ||||| Sbjct 1120096 GTAACGCTCTGACATGTAG-TTGTATGTTTCAATAACTTTATCAAGATTTTCTTCATGAA 1120038 Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581 | || ||||| | ||| | ||| ||||| ||||||||||| | ||| || |||| Sbjct 1120037 CAGCAACAGCGACTCTCATGAGCATATGCTGTGGTCTTTCAACAACTTTGCCATTGATTT 1119978 Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641 ||| || ||| | | ||||| |||||||| ||||| ||||| ||| ||| |||| | Sbjct 1119977 TCAATAAATAGCTTCTCTCCAATGTTTTAAATCCAAAGTAGTTATATCCAAAATCTCTGT 1119918 Query 54642 CGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 | || ||||| | || || | |||||| || Sbjct 1119917 CATAGATAATTGCAGAATTCAATTTATCTTT 1119887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||| || || ||||| |||| ||| || |||||||||| ||||||||||| | Sbjct 1120746 TCAAATTCTTCACCCCATACATCTGGCAAGCCTGGACATTCATGAGGACACATCAAACTC 1120687 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || | ||| | ||| |||| || ||| || | ||| || ||||| | ||| ||| || Sbjct 1120686 CATTTTCCATTATCAAAGACTCTTTGCATGAATAAATCTGGGATCCACAAAGC-ATAGAA 1120628 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 || ||||||| ||||||||| || || |||| Sbjct 1120627 AAGTTCTCTGGCTCTATGTTCTTCTTTGCCTG 1120596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 || ||| |||| ||| |||||| |||| | | || | ||||||||| || |||||| Sbjct 1121478 GAACCTTCATACGTAGAGTATGGACCTTTTTCTTTGGCAATTTCACAACTGGCTTCTAAT 1121419 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || ||||| || | ||||| ||||| | |||| || | || || || || || Sbjct 1121418 GCTCCGTAGTATAAAGTTTCAAAGATTTGAATATTAAGTTTCTGAGCCTCTTCACTCTCG 1121359 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 |||||||| | | | | ||| || || ||||| ||||||||||||||||| Sbjct 1121358 AATGGATATCTCATCAATAAAAATGCATCAGCTAAGCCTTGAACACCAATACC 1121306 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || |||||||| |||| |||||| | ||||||||||| |||| ||| ||||| || Sbjct 1119695 TTTCTTGGTTTCTTTATGTAAATTTGAGATTGCTATTCTAGCAGCTAAAATTGCATAGTC 1119636 Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 | ||||| |||||| ||||| || |||| || | | | || | ||| || || Sbjct 1119635 TGCATGTTTTGTAGTCATTGTGGCAGCGGTTTCAGCAGCTAAGTTATCAAGTTCCACAGT 1119576 Query 54898 TGTTACTCCATTATATATTCCTTGGATAAC 54927 ||| |||||| ||| | || | |||||| Sbjct 1119575 TGTAACTCCAGAATAAAGCCCATTGATAAC 1119546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718950517360