Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq89 116 4e-21 seq45 109 6e-19 seq222 104 3e-17 seq343 96.9 4e-15 seq325 96.9 4e-15 seq347 95.1 1e-14 seq303 95.1 1e-14 seq112 95.1 1e-14 seq326 89.7 6e-13 seq318 89.7 6e-13 seq298 89.7 6e-13 >seq89 Length=3244750 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | |||||| || ||||||| ||| |||||||||||||||||| || | | Sbjct 1691438 CCTCCTCTAAGACGCAATACTAAATGCAGTGTCGACTCCTTTTGAATATTGTAGTCTGAC 1691497 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || |||| || ||||| || || ||||| ||||| ||||| || || | || Sbjct 1691498 AAAGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGCTGTTGATCTGGGGGA 1691557 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | || | | | | |||||| | ||| || Sbjct 1691558 ATTCCTTCTTTGT-CTTGAATTTTGGCCTTCACGTTTTCAATTGTGTCGGAGGCTTCGAC 1691616 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || || || ||||| |||||||| Sbjct 1691617 CTCAAGTGTGATGGTTTTACCTGTCAGAGTTTTGACAAAAATTTGCAT 1691664 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||||||| | || |||||| ||||| || ||||| | || || || | Sbjct 1690537 ACGCAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAATCTGAGAGTGTACGTCC 1690596 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||||||||| || || || ||||| ||||| | || | | ||||| Sbjct 1690597 ATCCTCCAACTGCTTACCAGCAAAAATTAGACGCTGTTGGTCTGGAGGGATACCTTCCTT 1690656 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| |||||| ||| | || | | || || | ||| || || | ||||| Sbjct 1690657 GTCCTGGATTTTGGCTTTCACATTCTCAATGGTATCAGAAGCTTCAACCTCCAAAGTGAT 1690716 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || ||||||||||| || ||||| Sbjct 1690717 GGTCTTACCAGTAAGAGTCTTTACAAAAATCTGCAT 1690752 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| || ||||||| || || || | || || |||||||| || || || Sbjct 1691930 TCCTTCTGAATGTTATAATCAGACAAGGTGCGTCCATCTTCGAGCTGCTTTCCTGCAAAG 1691989 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || ||||||||| | || | || ||| ||||| ||| | |||| | | | | Sbjct 1691990 ATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT-TGAATCTTTGCCTTAACATT 1692048 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 || | ||||| | || || || | ||||||||||| || || |||||||| || Sbjct 1692049 TTCAATGGTGTCGGATGCCTCGACCTCCAATGTGATGGTTTTACCAGTCAGCGTCTTCAC 1692108 Query 43172 AAAGATTTGCATTTTTA 43188 |||||| |||||||||| Sbjct 1692109 AAAGATCTGCATTTTTA 1692125 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| || || |||||||| || ||| || ||||||||||| |||| Sbjct 1690754 CCACCTCGCAGACGTAATACTAAATGCAAAGTTGACTCTTTCTGAATATTGTAGTCAGAT 1690813 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || || || || ||||| || ||||| ||||| ||||| | || Sbjct 1690814 AGAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGG 1690873 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| || | | ||| | || | ||||| | | | ||||| | ||| || Sbjct 1690874 ATTCCCTCTTTAT-CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCAAC 1690932 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || ||||| || || ||||| ||||| || ||||| Sbjct 1690933 CTCCAATGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 1690980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/249 (68%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 42935 ATTATATTTATTGTCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTC 42994 ||||| ||| || | || ||||| || | | ||| || || || || | ||| ||| Sbjct 1689571 ATTATCTTTTTTTTT-TACTGTCCACCCCGGAGACGTAATACTAAGTGAAGTGTAGACTC 1689629 Query 42995 CTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATAT 43054 ||||| |||||||| || | ||||| || | || || || ||||| ||||| || || Sbjct 1689630 TTTTTGGATATTGTAGTCTGATAGAGTACGACCATCCTCAAGTTGCTTGCCAGCAAAAAT 1689689 Query 43055 GAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGC 43114 | ||||||||||| | || | | ||||||||| ||| || ||| | || | Sbjct 1689690 CAAACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTGGCTTTTACATTCTC 1689749 Query 43115 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 43174 | || || | ||| || || | |||||||| || || || || ||||| ||||| Sbjct 1689750 AATGGTATCAGAAGCTTCAACCTCCAATGTGATGGTCTTACCAGTAAGAGTCTTAACAAA 1689809 Query 43175 GATTTGCAT 43183 || ||||| Sbjct 1689810 AATCTGCAT 1689818 >seq45 Length=4254430 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4043487 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4043546 Query 60117 TCACCACTATACTACCGAGGATT 60139 | ||||||||||||||||||||| Sbjct 4043547 TTACCACTATACTACCGAGGATT 4043569 >seq222 Length=7060343 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3602900 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 3602841 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 3602840 TACTACCGAGGA 3602829 >seq343 Length=626199 Score = 96.9 bits (106), Expect = 4e-15 Identities = 81/97 (84%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 264882 AAAAAGTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 264825 Query 60117 TCACCACTATACTACCGAGGA-TTGAATATATAACTT 60152 | ||||||||||||| || || ||||||| | || || Sbjct 264824 TTACCACTATACTACTGAAGACTTGAATAGAGAAATT 264788 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 202475 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 202532 Query 60117 TCACCACTATACTACCGAGGATT 60139 | ||||||||||||| || |||| Sbjct 202533 TGACCACTATACTACTGAAGATT 202555 >seq325 Length=5113970 Score = 96.9 bits (106), Expect = 4e-15 Identities = 81/98 (83%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 60043 AATTAACGTTTATG-AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGT 60101 || ||| || || | |||||| | ||| | || ||||||||||||| |||||||||||| Sbjct 620669 AAATAAAGTATAGGCAAAAATATACTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGT 620610 Query 60102 GACAGGCGGACATACTCACCACTATACTACCGAGGATT 60139 ||||||||| ||||| ||||||||||||| || |||| Sbjct 620609 GACAGGCGGGGATACTGACCACTATACTACTGAAGATT 620572 >seq347 Length=8643572 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| Sbjct 5046419 TTTACCAAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 5046476 Query 60111 ACATACTCACCACTATACTACCGAGGA-TTGAATAT 60145 ||||| ||||||||||||| || || ||||| || Sbjct 5046477 GGATACTGACCACTATACTACTGAAGACTTGAAAAT 5046512 >seq303 Length=5426051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| Sbjct 3613742 TTTACCAAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 3613685 Query 60111 ACATACTCACCACTATACTACCGAGGATT 60139 ||||| ||||||||||||| || |||| Sbjct 3613684 GGATACTTACCACTATACTACTGAAGATT 3613656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 3982182 AAAAATTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3982125 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||| || || Sbjct 3982124 TGACCACTATACTACTGAAGA 3982104 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 839847 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACT 839788 Query 60133 GAGGATT 60139 || |||| Sbjct 839787 GAAGATT 839781 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 3511507 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACT 3511448 Query 60133 GAGGATT 60139 || |||| Sbjct 3511447 GAAGATT 3511441 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 3614310 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACT 3614251 Query 60133 GAGGATT 60139 || |||| Sbjct 3614250 GAAGATT 3614244 >seq112 Length=1966521 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1139441 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1139498 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT 60147 | ||||||||||||| || |||| |||||| Sbjct 1139499 TGACCACTATACTACTGAAGATT-CATATAT 1139528 >seq326 Length=978908 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 430152 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 430209 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||| || || Sbjct 430210 TGACCACTATACTACTGAAGA 430230 >seq318 Length=1477034 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 248188 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACT 248129 Query 60133 GAGGATT 60139 || |||| Sbjct 248128 GAAGATT 248122 >seq298 Length=2495523 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1134692 AAAAAGTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1134749 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||| || || Sbjct 1134750 TGACCACTATACTACTGAAGA 1134770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815048263960