Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq34 210 3e-49 seq56 122 1e-22 >seq34 Length=2688268 Score = 210 bits (232), Expect = 3e-49 Identities = 394/576 (68%), Gaps = 5/576 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || | | ||||| ||| || || || ||||| ||||||| || ||||| | Sbjct 1149186 CCTCATCGCGAGAAATTAGTTCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCT 1149245 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||||||||||| ||| || || ||||| |||||||| || || ||||| | Sbjct 1149246 TCAACCAAAATATGGCAGCAAAACTACCACTGAAGAAAATTCCTTCAACAGCTGCAAAAG 1149305 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33780 | |||| || ||| || | || || | ||| ||||| || |||||| | | Sbjct 1149306 CTATAACTCGCTCAGCAAATGTAGCACTCTTATGACTGATCCAGTTCATAGCCCAGTTAG 1149365 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 33840 | ||||| | |||||||| | ||||| || ||||| || | |||| | | | Sbjct 1149366 CTTTCTTGGTAACACAAGGTAGAGTTTCAATTGCATTGAACAAGTAGTCCCTCTGAGATG 1149425 Query 33841 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 33900 ||| ||| || ||||| || | ||| ||||||||| || || | ||||| |||| Sbjct 1149426 GATCAGTAATGTAGGTATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGG 1149485 Query 33901 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTT 33960 | | || || || ||||| || | |||||| || | || ||||| | ||||| | Sbjct 1149486 CTACTTGGAAGCCATAGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCT 1149545 Query 33961 CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTA 34020 | | | ||||||||| || || |||||| ||| ||||| || || |||||||| | Sbjct 1149546 CAACGAGATTTTCATTGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAA 1149605 Query 34021 TAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCC 34079 |||||| ||| |||| || || | || |||||| | ||||| || |||| || Sbjct 1149606 TAAAATGTTTCTCGT-TGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCT 1149664 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 |||||||| || ||||||||||| ||||| || || || ||||| | ||| || ||| | Sbjct 1149665 ACTTCTTCGACCGTCCAAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCAGGC 1149724 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 |||| || || || || || || | | |||||| Sbjct 1149725 CATTGAATGGGAAAGATCACGAAACGAGAAGGATTT 1149760 >seq56 Length=4197193 Score = 122 bits (134), Expect = 1e-22 Identities = 177/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 62316 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62375 ||||| |||||| || || |||| ||| | | ||| || || || || | | ||| Sbjct 1121853 ATAATTTCATTCTTCATGTCTTCATCCCAAAGATCTCTTTCAGTCAAGTCTTTCAAAAGA 1121794 Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435 || || || || | ||||||||||||||| || ||||| || | |||||||||||||| Sbjct 1121793 TGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCTTCGTGAATAAATATTACTGGTG 1121734 Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495 || || || | || || |||||||| | ||||| || || |||||||| ||||| ||| Sbjct 1121733 TAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGCTGTCGATGCAGTAGGCATTGGT 1121674 Query 62496 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAA 62555 || | | ||| |||||| | || ||| ||||| |||| | | | ||||| Sbjct 1121673 GCAAGAAGTAATGAATTTCTCACTCCATATTGAGCAATTTTTGCTTTCAAAGCTGCCCAA 1121614 Query 62556 TTCCAAAGAT 62565 | ||| |||| Sbjct 1121613 TCCCAGAGAT 1121604 Score = 107 bits (118), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 63715 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63774 |||| ||||| || |||||| || || | || || ||||| | || ||||| | Sbjct 1120081 GTAG-TTGTATGTTTCAATAACTTTATCAAGATTTTCTTCATGAACAGCAACAGCGACTC 1120023 Query 63775 GCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATT 63834 ||| | ||| ||||| ||||||||||||| |||| || |||||||| || ||| | Sbjct 1120022 TCATGAGCATATGCTGTGGTCTTTCAACAACTTTGCCATTGATTTTCAATAAATAGCTTC 1119963 Query 63835 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 63894 | ||||| |||||||| ||||| ||||| ||| ||| |||| || || ||||| | | Sbjct 1119962 TCTCCAATGTTTTAAATCCAAAGTAGTTATATCCAAAATCTCTGTCATAGATAATTGCAG 1119903 Query 63895 AATTGAGCTTATCCTT 63910 |||| | ||||| || Sbjct 1119902 AATTCAATTTATCTTT 1119887 Score = 96.9 bits (106), Expect = 4e-15 Identities = 214/322 (66%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| || || || ||||| || ||| | | ||| ||| || ||||| ||||| | Sbjct 1121225 TACCAATGGGCCTGTGTCTGAAGTTGGAGTTCTTAGCCTCTTTGATGGGATAGTAATTGA 1121166 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 | ||||| || ||| | ||||||| | || ||| | || || |||| ||| | | Sbjct 1121165 TGTCTATTATCCTATCTAAATTTCTGGTAGCAACCTTGGCAACTTCTTTCAATTTCATGA 1121106 Query 62908 AATCAAATCGCCC---------ATCTATT---ACAAACATGTTCAATGCAACAGATGCCA 62955 | ||| || | || |||| |||||||| || | |||| ||||||| Sbjct 1121105 AGTCATATGTGCGTTGATTTGGATTTATTTGGACAAACATATTAACAGCAATTGATGCCA 1121046 Query 62956 GATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 63015 |||||| || || || |||| || | || |||| | |||||| || | ||||| Sbjct 1121045 AATTACAAACTGCCACTTCATCAGGTGATGAGTACTGTACAACCTCAGTACATAAATTAC 1120986 Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 ||| |||| || || |||||||||||||| || ||||| ||||| || || | Sbjct 1120985 TACTTCTGATTGTGCCCAAATTTTGTTGATTGGATTTACGATTACAAGCATCTTTGTATA 1120926 Query 63076 GAATGAATGGAGTACCAGTTTC 63097 ||| |||| || |||||||| Sbjct 1120925 ACATGTATGGTGTTCCAGTTTC 1120904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || |||||||| ||||| ||||| || || | | ||| || | |||||| ||||| | Sbjct 1120525 TTACCTGTATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGA 1120466 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || || || | | |||| |||| || || ||||| || || | || | || |||||| Sbjct 1120465 TACATTGCAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTA 1120406 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63504 ||||| ||||| ||||| |||| | ||| || || | ||||| || |||| Sbjct 1120405 TTATACACTCTTAACATAGGAACTAAACCATTAGAAACTCCATTTGTTCCGG 1120354 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62112 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 62171 ||||| || || || ||||| ||| ||||| | | || | || ||||| | | Sbjct 1122143 CTCCAACCATAGAAGTGCATGGACGTAAGTTTTTCAGTCGTAGGTTTAGCCATATGTACA 1122084 Query 62172 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 62231 || | ||||||| |||||| ||||| ||||| || |||||||||||||| | || ||| Sbjct 1122083 TTGAGAGATTGAGATTGATCAATGAAAGCTCCTCTATCTGCAGCCATTTTCAAAATAGTC 1122024 Query 62232 TTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 ||||| | |||||||||| ||| ||||| | | | || | ||| || || Sbjct 1122023 TTTTGGGATATTTCCCAAACAGTCTTATATAGTTGTTTCAGATCGTCGGG 1121974 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 || ||| |||| ||| ||||| |||| | | || | || |||||| || |||||| Sbjct 1121478 GAACCTTCATACGTAGAGTATGGACCTTTTTCTTTGGCAATTTCACAACTGGCTTCTAAT 1121419 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || ||||| || | ||||||||||| | |||| || | || || || || || Sbjct 1121418 GCTCCGTAGTATAAAGTTTCAAAGATTTGAATATTAAGTTTCTGAGCCTCTTCACTCTCG 1121359 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 |||||||| | | | | ||| || || ||||| ||||||||||||||||| Sbjct 1121358 AATGGATATCTCATCAATAAAAATGCATCAGCTAAGCCTTGAACACCAATACC 1121306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814789438960