Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq34 192 5e-44 seq56 131 2e-25 >seq34 Length=2688268 Score = 192 bits (212), Expect = 5e-44 Identities = 407/599 (68%), Gaps = 15/599 (3%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 ||||||||||| || || | ||| ||||| || ||||| || || | ||||||||| Sbjct 1149200 ATTAGTTCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCTTCAACCAAAATATG 1149259 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 |||||||| |||| ||||| ||||| || ||||||||||| |||| |||| || Sbjct 1149260 GCAGCAAAACTACCACTGAAGAAAATTCCTTCAACAGCTGCAAAAGCTATAACTCGCTCA 1149319 Query 11786 CCATAT-----AC-CTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT 11839 || || || ||| | || ||||| || | ||||| | ||||||||| | Sbjct 1149320 GCAAATGTAGCACTCTTATGACTG---ATCCAGTTCATAGCCCAGTTAGCTTTCTTGGTA 1149376 Query 11840 ACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCT-ATATT-ATCTCTTA 11897 || || | ||||| || || || || || | | | ||| | || ||| | | Sbjct 1149377 ACACAAGGTAGAGTTTCAATTGCATTGAACAAGT--AGTCCCTCTGAGATGGATCAGTAA 1149434 Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957 || ||||| || | | |||||||||||| || | ||||||||| |||| ||| | Sbjct 1149435 TGTAGGTATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGGCTACTTGGA 1149494 Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017 | |||||||| || || ||||| | || || ||| |||| || | | || Sbjct 1149495 AGCCATAGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCTCAACGAGAT 1149554 Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT 12077 | ||||| ||||| |||||| | ||||| ||||||| || ||| ||||| | || Sbjct 1149555 TTTCATTGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAATAAAATGTT 1149614 Query 12078 TTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAA 12137 | |||| | | | || || ||||||| | | ||| |||||||| ||||||||||| | Sbjct 1149615 TCTCGTTGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCTACTTCTTCGA 1149674 Query 12138 CGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAG 12197 | |||||||| ||| | | || || ||||| | ||| |||||| | | | ||| | Sbjct 1149675 CCGTCCAAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCAGGCCATTGAATGG 1149734 Query 12198 GGAAAATAACGAACCTAGAATCAGACT-CTTGAAGAATAGGCTCCATTCGTGTATAAAA 12255 | || || ||||| | |||| | | ||||| ||| ||||||| | ||| || ||| Sbjct 1149735 GAAAGATCACGAAACGAGAAGGATTTTCCTTGAGCAAT-GGCTCCAGTTGTGGATCAAA 1149792 >seq56 Length=4197193 Score = 131 bits (144), Expect = 2e-25 Identities = 216/309 (70%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 37045 TGAATAGAACCATTATGTAACAC-AATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 || ||||| ||||| | || || |||| |||||| ||||| | || ||| | || ||| Sbjct 1121874 TGTATAGAGCCATTGT-TAGCAATAATTTCATTCTTCATGTCTTCATCCCAAAGATCTCT 1121816 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 | | ||| |||| || || ||||| || | || || ||||||||||| ||||| Sbjct 1121815 TTCAGTCAAGTCTTTCAAAAGATGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCT 1121756 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 || || ||| ||||| || || || || || || || || ||||| | | |||||| | Sbjct 1121755 TCGTGAATAAATATTACTGGTGTAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGC 1121696 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 ||| |||||||||||||||||||| | || | |||||||| ||||| | | ||| Sbjct 1121695 TGTCGATGCAGTAGGCATTGGTGCAAGAAGTAATGAATTTCTCACTCCATATTGAGCAAT 1121636 Query 37284 TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATA 37343 | | ||| | | ||||||||| | || ||| || || |||||| ||||| Sbjct 1121635 TTTTGCTTTCAAAGCTGCCCAATCCCAGAGATTTGTAGGAGTCACGTTCCACATGTCATA 1121576 Query 37344 TTGTAGAAT 37352 ||| | ||| Sbjct 1121575 TTGCAAAAT 1121567 Score = 120 bits (132), Expect = 3e-22 Identities = 189/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 ||||| || || || || || ||||| ||||| | ||| || | | |||||||| || Sbjct 1120501 AGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGATACATTGCAAAAGCTCCTGGCCTC 1120442 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 |||| |||||| || | || ||| | ||||||||||||| | |||||||||||| ||| Sbjct 1120441 TTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTATTATACACTCTTAACATAGGAACT 1120382 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTT 38286 | ||||||||| || ||| | |||| || |||||||| |||| || | Sbjct 1120381 AAACCATTAGAAACTCCATTTGTTCCGGCAATTCTTGTACCCTTGGCTCTGATTGTGTGG 1120322 Query 38287 ATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCA 38346 | ||| || || || || ||| ||| || || ||| ||| ||||| || ||| Sbjct 1120321 ACACTCAAACCAATGCCTCCAGCAGATTTACTTACTAGAGCACATCTCTTTAATGTGTCA 1120262 Query 38347 AATATACCTTCTATACTGTCATCCTTTATTG 38377 | |||||||| ||||| || || | |||| Sbjct 1120261 TAAATACCTTCAATACTATCTTCAGTCATTG 1120231 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTG 37753 ||| ||| | | |||||| || || |||||||| || | | | |||| || ||| | Sbjct 1121056 AATTGATGCCAAATTACAAACTGCCACTTCATCAG-GTGATGAGTACTGTACAACCTCAG 1120998 Query 37754 TACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAG 37813 |||| | |||||| ||| ||||| |||||||| |||||||||||| |||||||| Sbjct 1120997 TACATAAATTACTACTTCTGATTGTGCCCAAATTTTGTTGATTGGATTTACGATTACAAG 1120938 Query 37814 AATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCC 37873 |||||| |||| || || || ||||| ||||| ||| | | | || || | ||| Sbjct 1120937 CATCTTTGTATAACATGTATGGTGTTCCAGTTTCTACTTGTGACATCAAAACAGCTGTCC 1120878 Query 37874 ATAAA 37878 ||||| Sbjct 1120877 ATAAA 1120873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522709208080