Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq34 237 2e-57 seq56 132 6e-26 >seq34 Length=2688268 Score = 237 bits (262), Expect = 2e-57 Identities = 390/562 (69%), Gaps = 3/562 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || | | ||||| ||| ||| || || ||||| ||||||| || ||||| | Sbjct 1149186 CCTCATCGCGAGAAATTAGTTCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCT 1149245 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||||||||||| ||||| ||| |||||||||||||| || || ||||| | Sbjct 1149246 TCAACCAAAATATGGCAGCAAAACTACCACTGAAGAAAATTCCTTCAACAGCTGCAAAAG 1149305 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 36356 | |||| || ||| || | ||||| | ||| ||||| || |||||| | | Sbjct 1149306 CTATAACTCGCTCAGCAAATGTAGCACTCTTATGACTGATCCAGTTCATAGCCCAGTTAG 1149365 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 36416 | ||||| | |||||||| | || || || ||||| || | |||| | | | Sbjct 1149366 CTTTCTTGGTAACACAAGGTAGAGTTTCAATTGCATTGAACAAGTAGTCCCTCTGAGATG 1149425 Query 36417 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 36476 ||| ||| || |||||||| | ||| ||||||||| || || | ||||| |||| Sbjct 1149426 GATCAGTAATGTAGGTATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGG 1149485 Query 36477 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 36536 | | ||| || || ||||| || | |||||| || | || ||||| | ||||| | Sbjct 1149486 CTACTTGGAAGCCATAGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCT 1149545 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 | | | ||||||||| || || || ||| ||| ||||| || || |||||||| | Sbjct 1149546 CAACGAGATTTTCATTGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAA 1149605 Query 36597 TAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA 36656 |||||| ||| ||||| | | || |||||| | ||||| || |||| || | Sbjct 1149606 TAAAATGTTTCTCGTTGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCTA 1149665 Query 36657 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 36716 ||||||| || ||||||||||| ||||| || || || ||||| | ||| || ||| | Sbjct 1149666 CTTCTTCGACCGTCCAAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCAGGCC 1149725 Query 36717 ATTGAATTGGAAAAATAACAAA 36738 ||||||| ||||| || || || Sbjct 1149726 ATTGAATGGGAAAGATCACGAA 1149747 >seq56 Length=4197193 Score = 132 bits (146), Expect = 6e-26 Identities = 181/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 65106 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 65165 || ||||| |||||| || || |||| ||| | | ||| || || || || | | Sbjct 1121856 GCAATAATTTCATTCTTCATGTCTTCATCCCAAAGATCTCTTTCAGTCAAGTCTTTCAAA 1121797 Query 65166 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 65225 ||||| ||||| || | ||| ||||||||||| || ||||| || | |||||||||||| Sbjct 1121796 AGATGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCTTCGTGAATAAATATTACTG 1121737 Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 || || || || | ||| || |||||||| | ||||| || || |||||||| ||||| Sbjct 1121736 GTGTAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGCTGTCGATGCAGTAGGCATT 1121677 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 65345 ||||| | | ||| |||||| | || ||| ||||| |||| | || | || Sbjct 1121676 GGTGCAAGAAGTAATGAATTTCTCACTCCATATTGAGCAATTTTTGCTTTCAAAGCTGCC 1121617 Query 65346 CAATTCCAAAGAT 65358 |||| ||| |||| Sbjct 1121616 CAATCCCAGAGAT 1121604 Score = 107 bits (118), Expect = 3e-18 Identities = 263/398 (66%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| || || || ||||| || ||| | | ||| ||| || ||||| ||||| | Sbjct 1121225 TACCAATGGGCCTGTGTCTGAAGTTGGAGTTCTTAGCCTCTTTGATGGGATAGTAATTGA 1121166 Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 65700 | ||||| || ||| | ||||||| | || ||| | || || |||| ||| | | Sbjct 1121165 TGTCTATTATCCTATCTAAATTTCTGGTAGCAACCTTGGCAACTTCTTTCAATTTCATGA 1121106 Query 65701 AATCAAAT---CGCTCATCT------ATT---ACAAACATGTTCAATGCAACAGATGCCA 65748 | ||| || || | || | ||| |||||||| || | |||| ||||||| Sbjct 1121105 AGTCATATGTGCGTTGATTTGGATTTATTTGGACAAACATATTAACAGCAATTGATGCCA 1121046 Query 65749 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 65808 ||||||||| || || |||| || | || |||| | |||||| || | ||||| Sbjct 1121045 AATTACAAACTGCCACTTCATCAGGTGATGAGTACTGTACAACCTCAGTACATAAATTAC 1120986 Query 65809 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 65868 ||| |||| || || |||||||||||||| || ||||| ||||| || || | Sbjct 1120985 TACTTCTGATTGTGCCCAAATTTTGTTGATTGGATTTACGATTACAAGCATCTTTGTATA 1120926 Query 65869 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 65928 ||| |||| || |||||||| | || || | || ||| |||| | | |||| Sbjct 1120925 ACATGTATGGTGTTCCAGTTTCTACTTGTGACATCAAAACAGCTGTCCATAAATCACGAG 1120866 Query 65929 CCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 65966 | | ||| |||||| | |||||| ||||||| Sbjct 1120865 CATCAATTTGTCGTTTGTAACGTTTTTCTTCTTCGTAT 1120828 Score = 100 bits (110), Expect = 4e-16 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA-GGAGAAGCGTGCGTAAA 66493 || |||||||| || || | ||| | || | | | ||| | || ||||| ||||| || Sbjct 1120155 CTTGACATTTGTTGGCGTCCAGTACAAGC-TGAGAAAAGTGATGGTGAAGCATGCGTGAA 1120097 Query 66494 CCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 66552 | || || | |||| ||||| || |||||| || || | || || ||||| Sbjct 1120096 GTAACGCTCTGACATGTAG-TTGTATGTTTCAATAACTTTATCAAGATTTTCTTCATGAA 1120038 Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612 | || ||||| | ||| | ||| ||||| ||||||||||| | ||| || |||| Sbjct 1120037 CAGCAACAGCGACTCTCATGAGCATATGCTGTGGTCTTTCAACAACTTTGCCATTGATTT 1119978 Query 66613 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 66672 |||| || ||| | | ||||| |||||||| ||||| ||||| ||| ||| |||| | Sbjct 1119977 TCAATAAATAGCTTCTCTCCAATGTTTTAAATCCAAAGTAGTTATATCCAAAATCTCTGT 1119918 Query 66673 CGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 | || ||||| | || || | |||||| || Sbjct 1119917 CATAGATAATTGCAGAATTCAATTTATCTTT 1119887 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 64905 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 64964 ||||| || || || ||||| ||| ||||| | | || | || ||||| | | Sbjct 1122143 CTCCAACCATAGAAGTGCATGGACGTAAGTTTTTCAGTCGTAGGTTTAGCCATATGTACA 1122084 Query 64965 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 65024 || | ||||||| |||||| ||||| ||||| || |||||||||||||| | || ||| Sbjct 1122083 TTGAGAGATTGAGATTGATCAATGAAAGCTCCTCTATCTGCAGCCATTTTCAAAATAGTC 1122024 Query 65025 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 ||||| | |||||||||| ||| ||||| | | | || | ||| || || Sbjct 1122023 TTTTGGGATATTTCCCAAACAGTCTTATATAGTTGTTTCAGATCGTCGGG 1121974 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 ||| || |||||||| |||| |||||| | ||||||||||| |||| ||| ||||| || Sbjct 1119695 TTTCTTGGTTTCTTTATGTAAATTTGAGATTGCTATTCTAGCAGCTAAAATTGCATAGTC 1119636 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 | ||||| |||||| ||||| || |||| || || | | || | ||| || || Sbjct 1119635 TGCATGTTTTGTAGTCATTGTGGCAGCGGTTTCAGCAGCTAAGTTATCAAGTTCCACAGT 1119576 Query 66929 TGTTACTCCATTATATATTCCTTGGATAAC 66958 ||| |||||| ||| | || | |||||| Sbjct 1119575 TGTAACTCCAGAATAAAGCCCATTGATAAC 1119546 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || |||||||| ||||| ||||| || || | | ||| || |||||| ||||| | Sbjct 1120525 TTACCTGTATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGA 1120466 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 || || || | | |||| |||| || || ||||| || || | || | || |||||| Sbjct 1120465 TACATTGCAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTA 1120406 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 66297 ||||| ||||| ||||| |||| | |||||| || ||||| || |||| Sbjct 1120405 TTATACACTCTTAACATAGGAACTAAACCATTAGAAACTCCATTTGTTCCGG 1120354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| |||| ||| |||||| |||| | | || | ||||||||| || |||||| Sbjct 1121478 GAACCTTCATACGTAGAGTATGGACCTTTTTCTTTGGCAATTTCACAACTGGCTTCTAAT 1121419 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || ||||| || | ||||| ||||| | |||| || | || || || || || Sbjct 1121418 GCTCCGTAGTATAAAGTTTCAAAGATTTGAATATTAAGTTTCTGAGCCTCTTCACTCTCG 1121359 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 |||||||| | | | | ||| || || ||||| ||||||||||||||||| Sbjct 1121358 AATGGATATCTCATCAATAAAAATGCATCAGCTAAGCCTTGAACACCAATACC 1121306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169862903880