Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq89 136 4e-27 seq56 86.0 6e-12 >seq89 Length=3244750 Score = 136 bits (150), Expect = 4e-27 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| ||||||| || ||||| || || ||||| || || | Sbjct 1689820 CCACCACGCAGACGCAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAC 1689879 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| ||||||||||||||| |||| ||||| |||||||| ||||| Sbjct 1689880 AGTGTGCGTCCA-TCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGG 1689938 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | || | | ||| | ||||||| | |||| Sbjct 1689939 AATGCCTTCTTTGTC-TTGAATCTTGGCCTTGACATTTTCAATAGTGTCGGAAGCTTCCA 1689997 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || | ||| | ||||| || ||||| || || || || || |||||| || Sbjct 1689998 CTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACAAAGATCTGCATACCT 1690050 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| ||| ||||||| || ||||||||||| ||||||||||| Sbjct 1690981 GCCACCACGAAGACGCAGAACCAAGTGAAGAGTTGACTCTTTTTGGATGTTATAATCTGA 1691040 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| | |||||||||||| | || | ||| ||||| || ||||| Sbjct 1691041 CAATGTGCGACCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGCTGGTCTGGAGG 1691100 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| |||| | ||| | | ||| | |||||| | | || | Sbjct 1691101 GATGCCTTCTTTGTC-CTGAATTTTAGCTTTCACATTTTCAATTGTGTCAGATGCTTCGA 1691159 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | || || || || | || || || || |||||||| Sbjct 1691160 CTTCAAGAGTTATAGTTTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 1691208 Score = 116 bits (128), Expect = 4e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||||| ||||| || | || ||||| |||||||| || || || Sbjct 1691437 GCCTCCTCTAAGACGCAATACTAAATGCAGTGTCGACTCCTTTTGAATATTGTAGTCTGA 1691496 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| |||||||| || || | || ||||| || ||||| || || Sbjct 1691497 CAAAGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGCTGTTGATCTGGGGG 1691556 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||| | || | | ||| | |||||||| || || | Sbjct 1691557 AATTCCTTCTTTGTC-TTGAATTTTGGCCTTCACGTTTTCAATTGTGTCGGAGGCTTCGA 1691615 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| || | || || || |||| ||||| || || ||||||||| || Sbjct 1691616 CCTCAAGTGTGATGGTTTTACCTGTCAGAGTTTTGACAAAAATTTGCATACCT 1691668 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||||||||| ||||| || | Sbjct 1691210 CCACCACGCAGACGGAGTACCAAGTGGAGGGTGGACTCTTTTTGAATATTATAGTCCGAC 1691269 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| | ||| ||||||||| | || | ||| |||||||| || || Sbjct 1691270 AATGTGCGACCATCTTCCAACTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGTGGG 1691329 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | |||||| | || ||| || Sbjct 1691330 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCTGAGGCCTCGACT 1691389 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| ||||| || || |||||||| Sbjct 1691390 TCCAAAGTAATGGTTTTACCAGTCAATGTTTTAACAAAGATTTGCAT 1691436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || || || |||||||||||||| || |||| || | ||||||||||| || || Sbjct 1691924 GTGGATTCCTTCTGAATGTTATAATCAGACAAGGTGCGTCCA-TCTTCGAGCTGCTTTCC 1691982 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| | ||||| || || || ||||| |||||||| ||| | |||| | Sbjct 1691983 TGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC-TTGAATCTTTGCCT 1692041 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | ||| | ||||||| | ||| ||||| | || | || || || |||| || Sbjct 1692042 TAACATTTTCAATGGTGTCGGATGCCTCGACCTCCAATGTGATGGTTTTACCAGTCAGCG 1692101 Query 139746 TTTTTACGAATATTTGCAT 139764 | || || || || ||||| Sbjct 1692102 TCTTCACAAAGATCTGCAT 1692120 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| || |||||||||| |||||||||||||| || || || | Sbjct 1689589 TGTCCACCCCGGAGACGTAATACTAAGTGAAGTGTAGACTCTTTTTGGATATTGTAGT-- 1689646 Query 139595 CTCATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652 || || | | ||| || || || || || |||||| | |||| ||| ||||| || | Sbjct 1689647 CTGATAGAGTACGACCATCCTCAAGTTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTG 1689706 Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 |||| || ||||| ||||| ||| || ||||| | || | || || | | | Sbjct 1689707 GAGGGATACCTTCCTTGTCCTGGATCTTGGCTTTTACATTCTCAATGGTATCAGAAGCTT 1689766 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| | || | ||||| || || | || || || || || |||||| Sbjct 1689767 CAACCTCCAATGTGATGGTCTTACCAGTAAGAGTCTTAACAAAAATCTGCATA 1689819 >seq56 Length=4197193 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 153627 TTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACT 153686 || || ||||| || ||||| || ||||| || ||| || || | | || ||||| Sbjct 1121064 TTAACAGCAATTGATGCCAAATTACAAACTGCCACTTCATCAGGTGATGAGTACTGTACA 1121005 Query 153687 ATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGG 153746 | || | ||| ||||| || | | | || ||| |||| ||||||| ||| || Sbjct 1121004 ACCTCAGTACATAAATTACTACTTCTGATTGTGCCCAAATTTTGTTGATTGGATTTACGA 1120945 Query 153747 TTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793 |||||||| || ||||||| |||||||||||| || ||||| |||| Sbjct 1120944 TTACAAGCATCTTTGTATAACATGTATGGTGTTCCAGTTTCTACTTG 1120898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061786314400