Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq34 237 2e-57 seq56 136 5e-27 >seq34 Length=2688268 Score = 237 bits (262), Expect = 2e-57 Identities = 398/575 (69%), Gaps = 3/575 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| | | ||||| ||| ||| || || ||||| ||||||| || ||||| | Sbjct 1149186 CCTCATCGCGAGAAATTAGTTCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCT 1149245 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||||||||| | ||||| ||| ||||| |||||||| || || ||||| | Sbjct 1149246 TCAACCAAAATATGGCAGCAAAACTACCACTGAAGAAAATTCCTTCAACAGCTGCAAAAG 1149305 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 42263 | |||| || ||| || | ||||| | ||| ||||| || |||||| | | Sbjct 1149306 CTATAACTCGCTCAGCAAATGTAGCACTCTTATGACTGATCCAGTTCATAGCCCAGTTAG 1149365 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 42323 | ||||| | |||||||| | ||||| || ||||| || | |||| | | | Sbjct 1149366 CTTTCTTGGTAACACAAGGTAGAGTTTCAATTGCATTGAACAAGTAGTCCCTCTGAGATG 1149425 Query 42324 TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGG 42383 ||| ||| || ||||| || | ||| |||||||||||| || | ||||| |||| Sbjct 1149426 GATCAGTAATGTAGGTATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGG 1149485 Query 42384 CCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTT 42443 | | || || || ||||| || | ||||| || || || ||||| | ||||| | Sbjct 1149486 CTACTTGGAAGCCATAGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCT 1149545 Query 42444 CAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 42503 || | | |||||| || || || || ||| ||| ||||| || || |||||||| | Sbjct 1149546 CAACGAGATTTTCATTGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAA 1149605 Query 42504 TAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTA 42563 |||||| ||| |||| | || || |||||| | ||||| || |||| |||| Sbjct 1149606 TAAAATGTTTCTCGTTGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCTA 1149665 Query 42564 CTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGAT 42623 ||||||| |||||||||||||| || || || || || ||||| | ||| |||||| | Sbjct 1149666 CTTCTTCGACCGTCCAAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCAGGCC 1149725 Query 42624 ATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||||| || || || || || | | |||||| Sbjct 1149726 ATTGAATGGGAAAGATCACGAAACGAGAAGGATTT 1149760 >seq56 Length=4197193 Score = 136 bits (150), Expect = 5e-27 Identities = 184/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 71068 GCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 71127 |||||||| ||| || || ||||||| ||| | | ||| || || || || | | Sbjct 1121856 GCAATAATTTCATTCTTCATGTCTTCATCCCAAAGATCTCTTTCAGTCAAGTCTTTCAAA 1121797 Query 71128 AGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 71187 ||||||||||| || | ||| ||||||||||| || ||||| || | |||||||||||| Sbjct 1121796 AGATGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCTTCGTGAATAAATATTACTG 1121737 Query 71188 GTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 71247 || || || || | || || |||||||| | ||||| || || |||||||| ||||| Sbjct 1121736 GTGTAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGCTGTCGATGCAGTAGGCATT 1121677 Query 71248 GGTGCCACCAATAGACTATTTCTAAGACCAT-GTGATCGGATTTTATCTTTTAGAGATTC 71306 ||||| | | || |||||| | |||| ||| | ||||| |||| | || | | Sbjct 1121676 GGTGCAAGAAGTAATGAATTTCTCACTCCATATTGAGC-AATTTTTGCTTTCAAAGCTGC 1121618 Query 71307 CCAATTCCAAAGAT 71320 ||||| ||| |||| Sbjct 1121617 CCAATCCCAGAGAT 1121604 Score = 114 bits (126), Expect = 2e-20 Identities = 191/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA-GGAGAAGCGTGCGTAAA 72455 || |||||||| || || | ||| | || | | | ||| | || ||||| ||||| || Sbjct 1120155 CTTGACATTTGTTGGCGTCCAGTACAAGC-TGAGAAAAGTGATGGTGAAGCATGCGTGAA 1120097 Query 72456 CCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | || |||| |||| ||||| || |||||| || || | || || ||| | Sbjct 1120096 GTAACGCTCTGACATGTAG-TTGTATGTTTCAATAACTTTATCAAGATTTTCTTCATGAA 1120038 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || ||||| | ||| | ||||||||| ||||||||||| | ||| ||| |||| Sbjct 1120037 CAGCAACAGCGACTCTCATGAGCATATGCTGTGGTCTTTCAACAACTTTGCCATTGATTT 1119978 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 |||| || ||| | | ||||| |||||||| ||||| ||||| ||| ||| |||| | Sbjct 1119977 TCAATAAATAGCTTCTCTCCAATGTTTTAAATCCAAAGTAGTTATATCCAAAATCTCTGT 1119918 Query 72635 CGTAAATAATAACCGAATTGAGTTTATCCTT 72665 | || ||||| | ||||| | |||||| || Sbjct 1119917 CATAGATAATTGCAGAATTCAATTTATCTTT 1119887 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || |||||||| ||||| ||||| || || | | ||| || | |||||| ||||| | Sbjct 1120525 TTACCTGTATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGA 1120466 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || || || | | |||| |||| || || ||||| || || | || | || |||||| Sbjct 1120465 TACATTGCAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTA 1120406 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 72259 ||||| ||||| ||||| |||| | |||||| || | ||||| || |||| Sbjct 1120405 TTATACACTCTTAACATAGGAACTAAACCATTAGAAACTCCATTTGTTCCGG 1120354 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 ||| ||| |||| ||| |||||| |||| || || ||| | ||||||||| || ||||| Sbjct 1121479 TGAACCTTCATACGTAGAGTATGGACCTTTTTCTTTGGCAATTTCACAACTGGCTTCTAA 1121420 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATC 71492 |||||| || || | ||||| || || | |||| || | || || || || || Sbjct 1121419 TGCTCCGTAGTATAAAGTTTCAAAGATTTGAATATTAAGTTTCTGAGCCTCTTCACTCTC 1121360 Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 |||||||| | | | | ||| || || ||||| |||||||| |||||||| Sbjct 1121359 GAATGGATATCTCATCAATAAAAATGCATCAGCTAAGCCTTGAACACCAATACC 1121306 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 70867 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATA 70926 ||||| || || || ||||| ||| ||||| | |||| | || || || | | Sbjct 1122143 CTCCAACCATAGAAGTGCATGGACGTAAGTTTTTCAGTCGTAGGTTTAGCCATATGTACA 1122084 Query 70927 TTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 70986 || | || ||| |||||| ||||| ||||| || |||||||||||||| | || ||| Sbjct 1122083 TTGAGAGATTGAGATTGATCAATGAAAGCTCCTCTATCTGCAGCCATTTTCAAAATAGTC 1122024 Query 70987 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 ||||| | |||||||||| ||| ||||| | | | || | ||| || || Sbjct 1122023 TTTTGGGATATTTCCCAAACAGTCTTATATAGTTGTTTCAGATCGTCGGG 1121974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136205041320