Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq89 113 3e-20 seq336 104 2e-17 seq256 102 6e-17 seq123 98.7 7e-16 seq222 96.9 2e-15 >seq89 Length=3244750 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| | || | ||| || ||| ||||| ||||| || ||||| Sbjct 1691665 ACCTCCTCTCAATCTGAGTACAAGATGCAGTGTGGATTCTTTCTGAATGTTGTAATCTGA 1691724 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||||||||||||| ||||| ||||| | ||||| || | | Sbjct 1691725 CAGAGTG-CGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTG 1691783 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | || || |||||| |||||| || || | ||| |||||||| | ||| | Sbjct 1691784 GAATTCCCTCCTTATCTTGAATTTTGGCCTTAACATTCTCAATAGTATCTGAAGACTCAA 1691843 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 1691844 CCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 1691892 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| |||||||||||||||||| || ||| || |||| ||| Sbjct 1691228 ACCAAGTGGAGGGTGGACTCTTTTTGAATATTATAGTCCGACAATGTGCGACCATCTTCC 1691287 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || || ||||| || || || ||||| || | || | |||||||| ||| Sbjct 1691288 AACTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGG 1691347 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| | ||| || |||| | ||| || || | ||||| |||||| Sbjct 1691348 ATCTTGGCCTTGACATTTTCAATTGTGTCTGAGGCCTCGACTTCCAAAGTAATGGTTTTA 1691407 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || || ||||| ||||||||| Sbjct 1691408 CCAGTCAATGTTTTAACAAAGATTTGCATG 1691437 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||||||||| || |||||||| ||| || |||| ||| Sbjct 1691000 ACCAAGTGAAGAGTTGACTCTTTTTGGATGTTATAATCTGACAATGTGCGACCATCTTCC 1691059 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || || |||||||| |||| | |||||||| || | Sbjct 1691060 AATTGTTTACCAGCAAAAATTAAACGCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGA 1691119 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| || || | | || || || | || || ||||| Sbjct 1691120 ATTTTAGCTTTCACATTTTCAATTGTGTCAGATGCTTCGACTTCAAGAGTTATAGTTTTT 1691179 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||| ||||| |||||||| Sbjct 1691180 CCAGTGAGGGTCTTGACAAAAATTTGCAT 1691208 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| | || | || || ||| || || ||||| |||||||| Sbjct 1691893 ACCACCTCTCAATCTGAGTACAAGGTGGAGTGTGGATTCCTTCTGAATGTTATAATCAGA 1691952 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| || | || ||||||||||| ||||| | |||||||| | || Sbjct 1691953 CAAGGTGCGTCCATCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGG 1692012 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| ||| ||| || || | ||| || || | | ||| || Sbjct 1692013 GATGCCCTCTTTGTCTTGAATCTTTGCCTTAACATTTTCAATGGTGTCGGATGCCTCGAC 1692072 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| || | ||||||||||| || ||||| Sbjct 1692073 CTCCAATGTGATGGTTTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 1692120 >seq336 Length=3726090 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 ||||||| || || ||||| | | ||| |||| || ||||||||||| ||||| | Sbjct 1528380 CTTTTTGGATGTTGTAATCTTGGAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGA 1528439 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| | |||||| ||| |||| | ||||| |||||| ||||| ||||| | Sbjct 1528440 TCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACATTTT 1528499 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| |||||| | | || || || | ||||| |||||||| || ||||| || |||| Sbjct 1528500 CAATAGTATCAGAGGCTTCGACCTCCAAGGTAATAGTTTTACCAGTCAAAGTTTTGACAA 1528559 Query 44112 ATATTTGCAT 44121 | || ||||| Sbjct 1528560 AGATCTGCAT 1528569 >seq256 Length=3517054 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| || || || || |||||||| |||||| ||| ||| |||| ||| Sbjct 130803 ACTAAATGAAGGGTAGATTCCTTCTGAATATTGTAATCGGACAATGTACGTCCATCTTCC 130862 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| || || ||||| | ||||||||| |||| | ||||| |||||| Sbjct 130863 AATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGG 130922 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| | || |||| || || || | || || ||||| Sbjct 130923 ATTTTGGCCTTGACATTTTCAATGCTGTCAGCCGCATCAACCTCAAGGGTGATGGTTTTT 130982 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || |||||||| |||||||| Sbjct 130983 CCTGTGAGTGTTTTCACAAAGATTTGCAT 131011 >seq123 Length=3260300 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||||| ||||||||||| || || | || |||| ||||||||||| || || || Sbjct 712125 CTTTTTGTATATTATAATC-TTGAAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAG 712183 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||||| ||||| || |||| | || ||||| ||| ||||| |||||| | Sbjct 712184 ATCAACCTCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTAGCTTTGACATTT 712243 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | | || || || | ||||| || || || |||||||| || ||| Sbjct 712244 TCAATAGTATCAGAAGCTTCAACTTCCAAAGTAATGGTCTTGCCAGTTAAAGTTTTGACA 712303 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 712304 AAGATCTGCAT 712314 >seq222 Length=7060343 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||| || ||||| ||||| || || | ||| |||| ||||||||||| || ||||| Sbjct 1553859 CTTTCTGGATATTGTAATC-TTGAAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAG 1553917 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | |||||| || |||| | ||||||||||| ||||| ||||| | Sbjct 1553918 ATCAATCTTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGGATTTTAGCCTTGACATTT 1553977 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||| || | | ||| || || | || || || ||||| || ||||| || ||| Sbjct 1553978 TCAATAGTGTCAGAGGCCTCAACCTCCAAGGTGATGGTCTTACCAGTCAAAGTTTTAACA 1554037 Query 44111 AATATTTGCATGTCGAGTCTTTGTAAC 44137 || || ||||| | | | || | |||| Sbjct 1554038 AAAATCTGCATATTGTGGCTGTATAAC 1554064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776056384836