Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq303 123 3e-23 seq211 116 4e-21 >seq303 Length=5426051 Score = 123 bits (136), Expect = 3e-23 Identities = 206/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 164408 AAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTT 164467 ||||||| | || || || ||| |||||| | ||| ||||| ||||| ||||| | Sbjct 4376895 AAATGGGTATCGGCGGTCTGGATAAAGAATTCAGTGCTATCTTCAGGCGAGCTTTTGCAT 4376836 Query 164468 CTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTT 164527 | | ||||| ||| | | | ||||||| ||||| || | ||||| |||| Sbjct 4376835 CGCGCGTTTTTCCTCCAGAAGTTGTTATTCAATTAGGTTGTAAGCACGTTAAAGGTATTT 4376776 Query 164528 TATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTT 164587 | || |||| || |||||| |||||||||| | ||||||||| || | ||| | Sbjct 4376775 TGTTGTATGGTCCGCCTGGTACCGGTAAAACACTCATGGCTCGACAAATCGG-CAACATG 4376717 Query 164588 TTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAG 164644 || ||| || || || |||||| || |||||||| || | ||| ||||||| || | Sbjct 4376716 TTGAATGCGCGTGAACC--TAAAATCGTCAATGGTCCACAAATTTTGGACAAATACGTCG 4376659 Query 164645 GTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAA 164699 ||||| || || ||| ||||| || ||| ||||||||||||||| |||| Sbjct 4376658 GTGAGAGCGAGGCCAATATTAGACGATTATTTGCCGAGGCTGAAGAAGAAGAAAA 4376604 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 |||| ||| | || || ||||||||||| | ||||| ||||| || ||| || |||| Sbjct 4376434 TTCACGATACTGTAGTCAATCAGTTGCTAGCCAAAATTGATGGCGTTGAACAGTTGAATA 4376375 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 ||||| | | | |||||||||||| ||| ||| | ||||| || |||||| | |||| Sbjct 4376374 ATATTCTCGTCATTGGTATGACCAACAGACGTGACATGATTGACGAGGCTTTACTCCGAC 4376315 Query 164903 CTGGTCGATTAGA 164915 |||||||||| || Sbjct 4376314 CTGGTCGATTGGA 4376302 >seq211 Length=1509898 Score = 116 bits (128), Expect = 4e-21 Identities = 184/256 (72%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 ||||| || | |||||| ||||| | ||| ||||||| |||||| |||||||| | |||| Sbjct 53279 TGAGCTATCATATATGTCAATAAGGAATATGAAGCTATATTAAATGGTACACCAAGTCCC 53220 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTAT-AGCA---TAAAA 7013 || || || |||||||||| ||||||||| | || || || |||| ||||| Sbjct 53219 ATGTCAGCACTTCTTTGATAAAGTTGACAAGAAAG----TTCTCCATTAGCAACGTAAAA 53164 Query 7014 TTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT--ATATCAGATGGATTCCAA 7071 ||| |||| ||||||| || || | | | | | || || ||| |||||||||| Sbjct 53163 CTGAACCAATGCATGACAAGGTGGGAGAGC--CATTATTGGAATGTCAATTGGATTCCAA 53106 Query 7072 GCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTA--TAATTATTT 7129 || | ||| | || | |||||||| ||| ||| ||| |||| | | | || || ||| Sbjct 53105 GCTGACATAATGATTCTTCTATCATCTGG-TTTATTTAGAATTGTATCAATTACTTGTTT 53047 Query 7130 GTAATTGATCTATACC 7145 ||||||||| || || Sbjct 53046 -TAATTGATCAATGCC 53032 Score = 105 bits (116), Expect = 8e-18 Identities = 188/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 7142 TACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATT 7201 |||| || || ||||| ||||| || | ||| || ||||||||||| ||||| | Sbjct 52949 TACCTTGTCCAGTATAATCTGTATGCATGTTGACATATTTTGCTCCAAAATGCCTCCACT 52890 Query 7202 GAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTA 7261 |||| ||||||| || |||||||| || |||| | || |||| || | || || Sbjct 52889 GAAATCCATAAACCGGTCCTAAATCGCCAACTTCTCTATCCGTAAAACCACAGGAATCTA 52830 Query 7262 AATTAGATTTT---GATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTA 7318 | | ||| | || | || ||||||||| || || | | ||| | ||||| | | Sbjct 52829 A---AAATTCTCGCGAGCTATTAGCATCCCATATGTGAATATCTTTATCAGATAATTCTT 52773 Query 7319 AAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378 | ||| || || || |||| ||||| | |||||||| || | ||| |||||||| | Sbjct 52772 TGGCATTCGTTGAACCCTTAATAAACCAAAGTAGTTCTTCGACCACTCCGCGCCAAAATA 52713 Query 7379 TTCTTTTTGTAGTGAATAAAGGGAATGTACTTA 7411 ||| ||||| || || | ||| ||| ||| || Sbjct 52712 CTCTCTTTGTCGTTAAAAGAGGAAATATACCTA 52680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869340921200