Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq348 255 1e-63 seq300 228 2e-55 seq347 102 2e-17 seq346 96.9 7e-16 seq233 96.9 7e-16 seq191 96.9 7e-16 >seq348 Length=123677 Score = 255 bits (282), Expect = 1e-63 Identities = 419/601 (70%), Gaps = 11/601 (2%) Strand=Plus/Plus Query 7161 GTAGAATCCTTTCCGATACCTACCACTCTTCAATTCA---CTGTCTTTATCTATTACCAC 7217 || ||||||||| ||||| | ||| | || | | || || || || || || |||| Sbjct 76761 GTCGAATCCTTTTCGATATCGACCCGTGTTAACTCCAGCTCTATCCTTGTCAATGACCAA 76820 Query 7218 AAATCCATATT------TATTCCAACATGCCGAGCATAAATCTCTGAATGAGTTGTATGG 7271 ||| | || | ||||||| || | ||| || ||| ||||| | ||| | Sbjct 76821 AAAACTATGCTGATCACTATTCCAGCAGTTGGCGCACAACTCTTTGAATACGGGGTAAGA 76880 Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 ||| || || || | ||||| || ||||| || | ||||| | |||||||| || || Sbjct 76881 CATATCGGTGTTCGCGTGATCGTCGTAAATGTGTCTTAGATTAACATCATCTTGTCGAAA 76940 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 | ||||| || || |||| |||| || ||| |||||||| | | | ||| | ||| Sbjct 76941 TATGACGAGCAAATTGACATTGTCTCGAACCAGATGCTTGGGAACGTGGGCATACGATTG 77000 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 ||||||||| || ||||| || | |||||| || ||||||||||| | ||| | || Sbjct 77001 ACAGAGATAAAAACTGTCCACGTTCTTGTGACGTCCCATGCAGAAGTATGCTCGAACGTT 77060 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511 |||||| || ||||| || |||||||| || ||||| | ||||||||| ||| || | Sbjct 77061 ATCCTGCTTCTCACAGGCTACATCGTCGAAAATCATTAGCGAGTTAGGCAGAGCTTCGTT 77120 Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTT 7571 || || || |||||||| ||||| || | ||| ||| | |||||| ||| | | Sbjct 77121 CGGTGAGAGCACTGCTTCATGCTCGCTAAACGGTAAGTATCGCACACCATCTATCGGCTC 77180 Query 7572 AAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATAT 7631 | || | || || | ||||||||||||||| | |||||||||||| | |||| Sbjct 77181 CAATAGATCTTTCAAAAATTTATACTTTGGTTGGTTCAAAGACTTTGAGTACACGTATAC 77240 Query 7632 ATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCA-TTCGTCTTTC 7690 ||| ||||| | | |||||| ||||| || |||| |||| |||| || ||||| | Sbjct 77241 ATTTTCAAAACGAAGACCGTTCGGATGAGTGATCAGAGCGAGCA-AGCAGTTTGTCTTGC 77299 Query 7691 CACAGTTTGATGGCCCGCAAAACACTGCATGGATACTGTTGGGAAGTAAAGCACCGTGTC 7750 |||| || || || |||||||| ||||| |||| || || | | | | ||||||| Sbjct 77300 CACAATTCGAAGGTCCGCAAAATACTGCTCTGATAGAGTCCGGCAAGAGATCCCCGTGTC 77359 Query 7751 G 7751 | Sbjct 77360 G 77360 >seq300 Length=468496 Score = 228 bits (252), Expect = 2e-55 Identities = 396/568 (70%), Gaps = 12/568 (2%) Strand=Plus/Plus Query 7156 AAGCAGTAGAATCCTTTCCGATACCTACCACTC-TTCAATTCACTGTCTTTATCTATTAC 7214 || |||| ||| ||||| ||||||||||| ||| || |||| |||||||||||| ||||| Sbjct 364437 AAACAGTCGAAACCTTTGCGATACCTACC-CTCATTTAATTGACTGTCTTTATCAATTAC 364495 Query 7215 CACAAATCCATATTTAT------TCCAACATGCCGAGCATAAATCTCTGAAT-GAGTTGT 7267 | |||||| | |||| ||||||| ||||| |||||| |||| ||| Sbjct 364496 TAAAAATCCGTGCTTATCTCCATTCCAACAATGTGAGCACAAATCTTTGAAGCGAGCAA- 364554 Query 7268 ATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGAC 7327 ||| ||| || ||||| ||||| || | || || || || | || | |||||||| Sbjct 364555 ATGTCATATCTGTATTAACATGGTCGTTGTATATGTGTTTTATGTTTGTCTCATCTTGTT 364614 Query 7328 GGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAG 7387 | |||| | || || || |||| || | | || || || || | |||| ||| | Sbjct 364615 GAAACACTATTAGGAAATTCACATTGTCACGTACAAGATGTTTTGGAACACGTGCATATG 364674 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGA 7447 ||||| || || ||||| ||||||| || |||| |||||||| ||||||||||| | Sbjct 364675 ATTGACTCAGGTAAAAGCTATCAACATTTTTATGTCTCCCCATGCAAAAAAAAGCTTTCA 364734 Query 7448 TGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCAT 7507 ||||||||||||||| |||| ||| ||||| ||||| | ||||||||| || | Sbjct 364735 CACTATCCTGTTTTTCACACGCAATATCATCAAAAATCATGATGGAGTTAGGTAAGGCTT 364794 Query 7508 CTTCAGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATC 7566 ||||||| || ||| || || || |||||| |||| || || ||||| || Sbjct 364795 CTTCAGGTGATATAACACTCTCTTGGTCATTGAATG-CAAGATATTGCATTCCATCTATT 364853 Query 7567 TGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGA 7626 | | | || | || || | ||| || || || || || |||||||| || | Sbjct 364854 GGATCGATTAGCTCTTTGAGAAATTTATATTTGGGCTGATTCAGTGACTTTGAATATATG 364913 Query 7627 TATATATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTC 7686 |||| ||| |||||||| | || ||||||||| || || | || ||| ||| || Sbjct 364914 TATACATTTTCAAACCTAAGCCCATTTGGATGTGTGATGAGTGCCAATAGACAATTTGTT 364973 Query 7687 TTTCCACAGTTTGATGGCCCGCAAAACA 7714 || ||||||||||| || || ||||| Sbjct 364974 TTACCACAGTTTGAGGGGCCTACAAACA 365001 Score = 118 bits (130), Expect = 2e-22 Identities = 362/555 (65%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 3742 AAGGGTGTATTCCCGTATGAGTACATTGACAGTATTGACAGACTAGACGAGACACAGTTA 3801 || |||||||| || |||||||||||||| ||||||| | | |||| || | || | Sbjct 351786 AAAGGTGTATTTCCATATGAGTACATTGATTGTATTGAAAAATTAGAGGAACAAGAGCTT 351845 Query 3802 CCTGACCAG--GATTCATTTTATTCAAAATTAACTAATTCTACCATTTCCGATGACGATT 3859 ||| ||| || |||||||| | |||||||| ||| ||| | || |||| Sbjct 351846 CCT--CCAATTGAGGCATTTTATAGTAGCCTAACTAATGATACGATTAAGCAGGAGGATT 351903 Query 3860 ATGCTTTTGCTCAAGTAGTCTGGAACGAGTTTAAAATCAATACGCTTGGAGAGTACTCGG 3919 ||| || ||| || |||| | || |||| || | | || || ||||||| Sbjct 351904 ATGAGCACGCGCAAACTGTATGGAGCTTATTCCAAATAAAAAATATCGGTGAATACTCGG 351963 Query 3920 ACTTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGACGTA 3979 | ||||||||||| || ||||| | | ||| | ||| | |||||||| ||||| | Sbjct 351964 ATTTATACTTAAAAACCGATGTATTATTATTGTCCGATATATTTGAAAATTTTAGGGAGA 352023 Query 3980 GTTGTTTCAAGACATACAATTTAGACGCACTACACTTTTATACAGCACCAGGTCTTTCGA 4039 ||||| | || ||| | || || || | ||||||| |||| || || | Sbjct 352024 GTTGTATGGAGCACTACGGACTTGATCCATCGCATTATTATACAACACCCGGATTTACCT 352083 Query 4040 ACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAGATGC 4099 ||| ||| | || || || ||||| || | ||||| || | |||| || ||| Sbjct 352084 GGAGTGCTATGCTTAAACACACAAAAGTAAAATTAGAACTTTTGAGTGATATCGATATGG 352143 Query 4100 TTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGTAT-CGATGTGTGCTAATAGACATGCT 4158 | | || |||||||| | | | || || ||| | || | |||| | |||| Sbjct 352144 TATTATTTATTGAAAAAGCCATAAGAGGCGGATTATGTCAAGT-TAGTAATCGTTTTGCT 352202 Query 4159 GAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAACAACCCCGAAACATACCTG 4218 |||||| || | || ||||| |||||| | | || | ||| || || || Sbjct 352203 CGAGCTAATAATCCATACATGGGTGCAGATTTCAACCCCAATGAGCCCACAAGCTATCTT 352262 Query 4219 ATGTACTATGATGTAAATAATTTGTATGGCGCAGCGATGAGTATGTCTTTACCAAAGGGT 4278 ||||| ||||| || ||||| |||||||| || |||||| ||| |||||| ||| Sbjct 352263 ATGTATTATGACGTGAATAACTTGTATGGTCATGCAATGAGTCAATCTCTACCAACAGGT 352322 Query 4279 AAATTTGAATGGGTT 4293 ||||| |||||| Sbjct 352323 GGCTTTGAGTGGGTT 352337 Score = 118 bits (130), Expect = 2e-22 Identities = 275/409 (67%), Gaps = 7/409 (2%) Strand=Plus/Plus Query 5316 CGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTG 5375 ||||||||||| ||| || || | |||||| || ||||| |||| |||||| | |||| Sbjct 361073 CGCCACATTTTTTCCTTTAGAGTACGATTGAATCGCTCACAAATGGCTGCTTTCATATTG 361132 Query 5376 CTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTG 5435 || || |||||||| ||| || || | ||||| || | ||||| | ||| Sbjct 361133 CTAAAAGTTGAATAATGATGAATTTTAAATTTTTTCATAAGTTGCTTGAAAGTTGAATTG 361192 Query 5436 TAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGG--GAT-ACGACCTTGCTGAAGT 5492 ||||| ||||| || | |||| ||| | ||||| || | | || || || | || Sbjct 361193 TAAAATTCTTTTCCATTATCAGTATGTAAATTCTGCGGATGTTCACCACTTT--TTAA-A 361249 Query 5493 ACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAG 5552 | ||| ||| || || ||||| | || ||||||||| | ||| | || | Sbjct 361250 ATAGATAACATTGCCTCAGTTACATCATCGCCCCTTTTAGACCGCACTGGGATGGCATAT 361309 Query 5553 GCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGACTGTT 5612 ||||||| ||||||||| || | ||| || | || || | |||| ||| || | Sbjct 361310 CCATATTTGCTAAATATATCGATTACTGTGAGTAAGTATTTATGACCTTCATTAACCTTA 361369 Query 5613 GCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACCTCGGATATCA 5672 || |||||||||||||| || | ||||||||||| || || | | || ||||| Sbjct 361370 GCGTATGGAATCATCTCGACAAGATCAGCTTGCCATGTATCTCCTATGCCCATCATATCG 361429 Query 5673 ACATGACGACGTTTATAGTTTCTACGAGCTGGTTTGTGAAGCTC-TTCA 5720 | | | ||| |||| |||||||||||| ||||| || |||| Sbjct 361430 AAGCTTCTTCTAGGATAATTTCGACGAGCTGGTTTATGAAGTTCATTCA 361478 >seq347 Length=8643572 Score = 102 bits (112), Expect = 2e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 7588 AACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTCAAA 7647 |||| ||||||||||||||| | ||||||||||| | |||| ||| ||||| | | | Sbjct 8343361 AACTTATACTTTGGTTGGTTCAACGACTTTGAGTACACGTATACATTTTCAAAACGAAGA 8343302 Query 7648 CCGTTTGGATGTACAATAAGAGACAGCAGAGCA-TTCGTCTTTCCACAGTTTGATGGCCC 7706 ||||| ||||| || |||| |||| |||| || ||||| ||||| || || || | Sbjct 8343301 CCGTTCGGATGAGTGATCAGAGCGAGCA-AGCAGTTTGTCTTGCCACAATTCGAAGGTTC 8343243 Query 7707 GCAAAACACTGCATGGATACTGTTGGGAAGTAAAGCACCGTGTCG 7751 |||||| ||||| | |||| || || | ||| | |||||||| Sbjct 8343242 GCAAAATACTGCTTTGATAGAGTCCGGCAAGAAATCCCCGTGTCG 8343198 >seq346 Length=1565876 Score = 96.9 bits (106), Expect = 7e-16 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 6158 TTTAATATATAACTCCAGCCTCCCTAAGCTCTTCAATAATTGACATGATTTCATTCGTGT 6217 || |||||||| |||||||| | |||||||| | ||||| | ||||||||||| | Sbjct 859344 TTCAATATATATAGCCAGCCTCACGTAGCTCTTCGACGATTGAGCTAATTTCATTCGTAT 859403 Query 6218 GACTTGGGTTTCCAGCAGCTTGAGATGCCATCAGTAGTCGCAAACGATCAACTAGCTCAT 6277 |||| ||||||||| | | || || || |||| | ||||| |||| ||| | Sbjct 859404 GACTATTGTTTCCAGCCGATGTTTCCGCTATGAGAAGTCTGAGTCGATCTACTAACTCGT 859463 Query 6278 TTGGATCATCCCAGTAAACATAATCC 6303 |||||||||||||||| || |||||| Sbjct 859464 TTGGATCATCCCAGTAGACGTAATCC 859489 >seq233 Length=4974 Score = 96.9 bits (106), Expect = 7e-16 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 6158 TTTAATATATAACTCCAGCCTCCCTAAGCTCTTCAATAATTGACATGATTTCATTCGTGT 6217 || |||||||| |||||||| | |||||||| | ||||| | ||||||||||| | Sbjct 927 TTCAATATATATAGCCAGCCTCACGTAGCTCTTCGACGATTGAGCTAATTTCATTCGTAT 868 Query 6218 GACTTGGGTTTCCAGCAGCTTGAGATGCCATCAGTAGTCGCAAACGATCAACTAGCTCAT 6277 |||| ||||||||| | | || || || |||| | ||||| |||| ||| | Sbjct 867 GACTATTGTTTCCAGCCGATGTTTCCGCTATGAGAAGTCTGAGTCGATCTACTAACTCGT 808 Query 6278 TTGGATCATCCCAGTAAACATAATCC 6303 |||||||||||||||| || |||||| Sbjct 807 TTGGATCATCCCAGTAGACGTAATCC 782 >seq191 Length=6238 Score = 96.9 bits (106), Expect = 7e-16 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 6158 TTTAATATATAACTCCAGCCTCCCTAAGCTCTTCAATAATTGACATGATTTCATTCGTGT 6217 || |||||||| |||||||| | |||||||| | ||||| | ||||||||||| | Sbjct 927 TTCAATATATATAGCCAGCCTCACGTAGCTCTTCGACGATTGAGCTAATTTCATTCGTAT 868 Query 6218 GACTTGGGTTTCCAGCAGCTTGAGATGCCATCAGTAGTCGCAAACGATCAACTAGCTCAT 6277 |||| ||||||||| | | || || || |||| | ||||| |||| ||| | Sbjct 867 GACTATTGTTTCCAGCCGATGTTTCCGCTATGAGAAGTCTGAGTCGATCTACTAACTCGT 808 Query 6278 TTGGATCATCCCAGTAAACATAATCC 6303 |||||||||||||||| || |||||| Sbjct 807 TTGGATCATCCCAGTAGACGTAATCC 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97973984649778