Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq34 111 2e-19 >seq34 Length=2688268 Score = 111 bits (122), Expect = 2e-19 Identities = 375/581 (65%), Gaps = 13/581 (2%) Strand=Plus/Plus Query 21458 AATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAAT 21517 |||| ||| || | ||| || |||| | | |||| | | ||||| | | |||| | Sbjct 1149149 AATTATTTTAATA-CAATGATTCAAAGTTAAAATGTTACC--TCATCGCGAGAAATTAGT 1149205 Query 21518 TCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA 21577 ||||| || || | || |||||||| |||| ||| || ||||||||||| | ||| Sbjct 1149206 TCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCTTCAACCAAAATATGGCAGCA 1149265 Query 21578 AA--TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGT 21635 || | | ||||| |||||| || ||||| || ||||| || | | ||| ||| | Sbjct 1149266 AAACTACCACTGAA--GAAAATTCCTTCAACAGCTGCAAAAGCTATAACTCGCTCAGCAA 1149323 Query 21636 ATGTAG-ATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATAC 21692 |||||| | |||| || ||||| || ||||| || || |||||| ||| || Sbjct 1149324 ATGTAGCACTCTT-ATGACTGATCCAGTTCATAGCCCAGTTAGC--TTTCTTGGTAACAC 1149380 Query 21693 AATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNN 21752 || | || ||||| || || || | | | | | | | ||| || ||| Sbjct 1149381 AAGGTAGAGTTTCAATTGCATTGAACAAGTAGTCCCTCTGAGATGGATCAGTAATGTAGG 1149440 Query 21753 NNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGT 21812 ||||||||| || || | |||||| || |||| || || || | Sbjct 1149441 TATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGGCTACTTGGAAGCCAT 1149500 Query 21813 AAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCAT 21872 | || || | ||||| | |||||| || ||||| | | | | ||||||| Sbjct 1149501 AGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCTCAACGAGATTTTCAT 1149560 Query 21873 TTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGT 21932 | || || |||||| ||| ||||| ||||| |||| || ||||||| | |||| Sbjct 1149561 TGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAATAAAATGTTTCTCGT 1149620 Query 21933 TATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCC 21992 | || | || ||| |||||| | ||| |||||||| ||||||||||| |||| Sbjct 1149621 TGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCTACTTCTTCGACCGTCC 1149680 Query 21993 AAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCA 22033 |||| ||| ||| || || ||||| ||| |||||| Sbjct 1149681 AAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCA 1149721 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/156 (72%), Gaps = 8/156 (5%) Strand=Plus/Plus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttt-------ttttGACATAAT 21177 |||||||||||||| || | ||||| ||| ||| | || | ||| ||| | Sbjct 1148654 ATTTAAAAATCAGCCTCGACAGAGAAGTTATTTTCTCCCTTACTTCTCTCTTG-CATGAC 1148712 Query 21178 TCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGA 21237 |||| ||||| || || | |||| | ||||| || ||||||||||||||||||||||| Sbjct 1148713 TCCCCACTTTTGGTATTCTCCAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCCAATGA 1148772 Query 21238 TATAGATTCCATAAAATCAAATGGATTTTCAGATTT 21273 || |||||| || || || ||||| || || || Sbjct 1148773 AATTTGTTCCATGAAGTCGAAAGGATTCTCCGAGTT 1148808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531898426392680