Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq34 223 4e-53 seq56 127 3e-24 >seq34 Length=2688268 Score = 223 bits (246), Expect = 4e-53 Identities = 397/576 (69%), Gaps = 5/576 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || | | ||||||||| ||| || || ||||| ||||||| || ||||| | Sbjct 1149186 CCTCATCGCGAGAAATTAGTTCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCT 1149245 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||||||||||| ||| || ||| ||||| |||||||| || || ||||| | Sbjct 1149246 TCAACCAAAATATGGCAGCAAAACTACCACTGAAGAAAATTCCTTCAACAGCTGCAAAAG 1149305 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33502 | |||| || ||| || | || || | ||| ||||| || |||||| | | Sbjct 1149306 CTATAACTCGCTCAGCAAATGTAGCACTCTTATGACTGATCCAGTTCATAGCCCAGTTAG 1149365 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 33562 | ||||| | |||||||| | ||||| || ||||| || | |||| | | | Sbjct 1149366 CTTTCTTGGTAACACAAGGTAGAGTTTCAATTGCATTGAACAAGTAGTCCCTCTGAGATG 1149425 Query 33563 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 33622 ||| ||| || ||||| || | ||| ||||||||| || || | ||||| |||| Sbjct 1149426 GATCAGTAATGTAGGTATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGG 1149485 Query 33623 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33682 | | || || || ||||| || | |||||| || | || ||||| | ||||| | Sbjct 1149486 CTACTTGGAAGCCATAGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCT 1149545 Query 33683 CCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33742 | | | ||||||||| || || || ||| ||| ||||| || || |||||||| | Sbjct 1149546 CAACGAGATTTTCATTGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAA 1149605 Query 33743 TAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCT 33801 |||||| ||| |||| || || | || |||||| | ||||| || |||| ||| Sbjct 1149606 TAAAATGTTTCTCGT-TGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCT 1149664 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 |||||||| || ||||||||||| ||||| || || || ||||||| ||| || ||| Sbjct 1149665 ACTTCTTCGACCGTCCAAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCAGGC 1149724 Query 33862 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 |||| || || || || || || | | |||||| Sbjct 1149725 CATTGAATGGGAAAGATCACGAAACGAGAAGGATTT 1149760 >seq56 Length=4197193 Score = 127 bits (140), Expect = 3e-24 Identities = 180/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 62262 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62321 || ||||| |||||| || || |||| ||| | | ||| || || || || | | Sbjct 1121856 GCAATAATTTCATTCTTCATGTCTTCATCCCAAAGATCTCTTTCAGTCAAGTCTTTCAAA 1121797 Query 62322 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62381 ||||| ||||| || | ||| ||||||||||| || ||||| || | |||||||||||| Sbjct 1121796 AGATGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCTTCGTGAATAAATATTACTG 1121737 Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 || || || || | || || |||||||| | ||||| || || |||||||| ||||| Sbjct 1121736 GTGTAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGCTGTCGATGCAGTAGGCATT 1121677 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62501 ||||| | | ||| |||||| | || ||| ||||| |||| | || | || Sbjct 1121676 GGTGCAAGAAGTAATGAATTTCTCACTCCATATTGAGCAATTTTTGCTTTCAAAGCTGCC 1121617 Query 62502 CAATTCCAAAGAT 62514 |||| ||| |||| Sbjct 1121616 CAATCCCAGAGAT 1121604 Score = 100 bits (110), Expect = 4e-16 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA-GGAGAAGCGTGCGTAAA 63649 || |||||||| || || | ||| | || | | | ||| | || ||||| ||||| || Sbjct 1120155 CTTGACATTTGTTGGCGTCCAGTACAAGC-TGAGAAAAGTGATGGTGAAGCATGCGTGAA 1120097 Query 63650 CCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708 | || || | |||| ||||| || |||||| || || | || || ||||| Sbjct 1120096 GTAACGCTCTGACATGTAG-TTGTATGTTTCAATAACTTTATCAAGATTTTCTTCATGAA 1120038 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768 | || ||||| | ||| | ||| ||||| ||||||||||| | ||| || |||| Sbjct 1120037 CAGCAACAGCGACTCTCATGAGCATATGCTGTGGTCTTTCAACAACTTTGCCATTGATTT 1119978 Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63828 |||| || ||| | | ||||| |||||||| ||||| ||||| ||| ||| |||| | Sbjct 1119977 TCAATAAATAGCTTCTCTCCAATGTTTTAAATCCAAAGTAGTTATATCCAAAATCTCTGT 1119918 Query 63829 CGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 | || ||||| | || || | |||||| || Sbjct 1119917 CATAGATAATTGCAGAATTCAATTTATCTTT 1119887 Score = 100 bits (110), Expect = 4e-16 Identities = 215/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 |||| || || || ||||| || ||| | | ||| ||| || ||||| ||||| | Sbjct 1121225 TACCAATGGGCCTGTGTCTGAAGTTGGAGTTCTTAGCCTCTTTGATGGGATAGTAATTGA 1121166 Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856 | ||||| || ||| | ||||||| | || ||| | || || |||| ||| | | Sbjct 1121165 TGTCTATTATCCTATCTAAATTTCTGGTAGCAACCTTGGCAACTTCTTTCAATTTCATGA 1121106 Query 62857 AATCAAATCGCCC---------ATCTATT---ACAAACATGTTCAAGGCAACAGATGCCA 62904 | ||| || | || |||| |||||||| || | |||| ||||||| Sbjct 1121105 AGTCATATGTGCGTTGATTTGGATTTATTTGGACAAACATATTAACAGCAATTGATGCCA 1121046 Query 62905 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62964 ||||||||| || || |||| || | || |||| | |||||| || | ||||| Sbjct 1121045 AATTACAAACTGCCACTTCATCAGGTGATGAGTACTGTACAACCTCAGTACATAAATTAC 1120986 Query 62965 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63024 ||| |||| || || |||||||||||||| || ||||| ||||| || || | Sbjct 1120985 TACTTCTGATTGTGCCCAAATTTTGTTGATTGGATTTACGATTACAAGCATCTTTGTATA 1120926 Query 63025 GAATGAATGGAGTACCAGTTTC 63046 ||| |||| || |||||||| Sbjct 1120925 ACATGTATGGTGTTCCAGTTTC 1120904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || |||||||| ||||| ||||| || || | | ||| || | |||||| ||||| | Sbjct 1120525 TTACCTGTATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGA 1120466 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || || || | | |||| |||| || || ||||| || || | || | || |||||| Sbjct 1120465 TACATTGCAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTA 1120406 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63453 ||||| ||||| ||||| |||| | ||| || || | ||||| || |||| Sbjct 1120405 TTATACACTCTTAACATAGGAACTAAACCATTAGAAACTCCATTTGTTCCGG 1120354 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62061 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 62120 ||||| || || || ||||| ||| ||||| | | || | || ||||| | | Sbjct 1122143 CTCCAACCATAGAAGTGCATGGACGTAAGTTTTTCAGTCGTAGGTTTAGCCATATGTACA 1122084 Query 62121 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 62180 || | ||||||| |||||| ||||| ||||| || |||||||||||||| | || ||| Sbjct 1122083 TTGAGAGATTGAGATTGATCAATGAAAGCTCCTCTATCTGCAGCCATTTTCAAAATAGTC 1122024 Query 62181 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 ||||| | |||||||||| ||| ||||| | | | || | ||| || || Sbjct 1122023 TTTTGGGATATTTCCCAAACAGTCTTATATAGTTGTTTCAGATCGTCGGG 1121974 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 || ||| |||| ||| |||||| |||| | | || | ||||||||| || |||||| Sbjct 1121478 GAACCTTCATACGTAGAGTATGGACCTTTTTCTTTGGCAATTTCACAACTGGCTTCTAAT 1121419 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 || ||||| || | ||||| ||||| | |||| || | || || || || || Sbjct 1121418 GCTCCGTAGTATAAAGTTTCAAAGATTTGAATATTAAGTTTCTGAGCCTCTTCACTCTCG 1121359 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 |||||||| | | | | ||| || || ||||| ||||||||||||||||| Sbjct 1121358 AATGGATATCTCATCAATAAAAATGCATCAGCTAAGCCTTGAACACCAATACC 1121306 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || || || || ||||| |||| ||| || |||||||||| ||||||||||| | Sbjct 1120746 TCAAATTCTTCACCCCATACATCTGGCAAGCCTGGACATTCATGAGGACACATCAAACTC 1120687 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || | ||| | ||| |||| || ||| || | ||| || ||||| | ||| ||| || Sbjct 1120686 CATTTTCCATTATCAAAGACTCTTTGCATGAATAAATCTGGGATCCACAAAGC-ATAGAA 1120628 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288 || ||||||| ||||||||| || || |||| Sbjct 1120627 AAGTTCTCTGGCTCTATGTTCTTCTTTGCCTG 1120596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944420098120