Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq89 118 9e-22 seq56 100 2e-16 seq336 84.2 2e-11 >seq89 Length=3244750 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || | ||||| ||| | || || | || |||||||| Sbjct 1692123 AAAATGCAGATCTTTGTGAAGACGCTGACTGGTAAAACCATCACATTGGAGGTCGAGGCA 1692064 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||| || | || || ||||||| |||||||| ||||| || || || Sbjct 1692063 TCCGACACCATTGAAAATGTTAAGGCAAAGATTCAAGACAAAGAGGGCATCCCCCCAGAC 1692004 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || |||||| |||| | | || ||||| |||||||||| | | | | |||||| Sbjct 1692003 CAGCAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGATGGACGCACCTTGTCTGATTAT 1691944 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || ||||| ||| | || | || | ||||||||||| || Sbjct 1691943 AACATTCAGAAGGAATCCACACTCCACCTTGTACTCAGATTGAGAGGTGG 1691894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| ||| | ||||| | |||||||||||| Sbjct 1691436 ATGCAAATCTTTGTTAAAACATTGACTGGTAAAACCATTACTTTGGAAGTCGAGGCCTCA 1691377 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| ||||||||||| || || || ||||| Sbjct 1691376 GACACAATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAG 1691317 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | |||| | || ||||| | ||||||| | | | || ||||| Sbjct 1691316 CAGCGTTTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACATTGTCGGACTATAAT 1691257 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||||||||| || || Sbjct 1691256 ATTCAAAAAGAGTCCAC 1691240 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | || || | || ||||| ||| | Sbjct 1691664 ATGCAAATTTTTGTCAAAACTCTGACAGGTAAAACCATCACACTTGAGGTCGAAGCCTCC 1691605 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || ||| ||||||||||| || || || |||||| Sbjct 1691604 GACACAATTGAAAACGTGAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGATCAA 1691545 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA--ACGTCAGCGATTATA 24168 ||| | || |||| || ||| || || || ||||| | | | |||| || || | Sbjct 1691544 CAGCGTCTCATTTTCGCCGGAAAACAGCTTGAAGACGGTCGCACTTTGTCA--GACTACA 1691487 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | |||||||| || || ||| | |||||||| || | | |||||||| Sbjct 1691486 ATATTCAAAAGGAGTCGACACTGCATTTAGTATTGCGTCTTAGAGGAGG 1691438 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | ||||||||| | || || | |||||||| || Sbjct 1691209 AATGCAAATTTTTGTCAAGACCCTCACTGGAAAAACTATAACTCTTGAAGTCGAAGCATC 1691150 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| || ||| |||||||||||||| ||||| || || Sbjct 1691149 TGACACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCA 1691090 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGATTAT 24167 ||| | | |||| | || || ||| | ||||||| | | |||| |||||| Sbjct 1691089 GCAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACATTGTCA--GATTAT 1691032 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| |||||||| || || |||| || || Sbjct 1691031 AACATCCAAAAAGAGTCAACTCTTCACTTGGT 1691000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | |||||| | || || ||| | Sbjct 1691892 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCTTCA 1691833 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || || ||| || || || || || || || ||||| Sbjct 1691832 GATACTATTGAGAATGTTAAGGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCAG 1691773 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAAC-GTCAGCGATTATA 24168 |||||| |||| | | || || ||| | ||||||| || | | ||||| |||| | Sbjct 1691772 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGCACTCTGTCAG--ATTACA 1691715 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| |||||||| ||| | ||| | || | |||||||||||||| Sbjct 1691714 ACATTCAGAAAGAATCCACACTGCATCTTGTACTCAGATTGAGAGGAGG 1691666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || ||||| | || ||| | ||||| || || | Sbjct 1690046 ATGCAGATCTTTGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAAGCTTCC 1689987 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| |||||||||||||| ||||| ||||| Sbjct 1689986 GACACTATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 1689927 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 ||| | || || | | || || || || |||||| ||| | || ||| || || | Sbjct 1689926 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGACGCACACTGTC--TGACTACA 1689869 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||| || || || || || |||| || || Sbjct 1689868 ACATCCAGAAGGAGTCGACTCTTCACTTGGT 1689838 >seq56 Length=4197193 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 132197 AGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTA 132256 ||||| |||| || ||||| |||| || ||||||||||||||| || | |||||| Sbjct 1121796 AGATGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCTTCGTGAATAAATATTACTG 1121737 Query 132257 GTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATG 132316 || | ||||| | |||||||| ||||| | |||||| ||||||| ||| || ||||| Sbjct 1121736 GTGTAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGCTGTCGATGCAGTAGGCATT 1121677 Query 132317 TAGGCAATCAATAATGAATT 132336 |||| | ||||||||| Sbjct 1121676 GGTGCAAGAAGTAATGAATT 1121657 >seq336 Length=3726090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||||||||| | ||||| ||||| || ||||| ||| | |||||| | || ||||| Sbjct 1528575 AACAAAATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATTACCTTGGAGGTCGAA 1528516 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 ||| || || || || | ||||| || || || || ||||| || ||||| Sbjct 1528515 GCCTCTGATACTATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCG 1528456 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||| || ||| |||| | | || || ||| | ||||||| | | || ||| Sbjct 1528455 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTCCAAGAT 1528396 Query 24165 TATAACATTCAAAAAG 24180 || ||||| ||||||| Sbjct 1528395 TACAACATCCAAAAAG 1528380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934129375335