Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq222 188 5e-43 seq89 125 5e-24 seq24 109 4e-19 seq299 95.1 8e-15 seq336 93.3 3e-14 seq19 89.7 3e-13 seq256 87.8 1e-12 >seq222 Length=7060343 Score = 188 bits (208), Expect = 5e-43 Identities = 291/412 (71%), Gaps = 10/412 (2%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || || || || |||||||||||| | || ||||| || ||||| || || || Sbjct 4007391 GATGCCTTTTATCGTTACAAAATGCCGAGAATTCAGGCCAAAGTTGAGGGCAAAGGTAAT 4007332 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || ||||| |||||||| ||||| ||| || || || || || |||| || || ||| Sbjct 4007331 GGCATTAAGACCGTCATCGTCAATATGGTCGAGGTGGCCAAAGCCATCGGTCGGCCAGCC 4007272 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 ||||| || ||||||| || || ||||| || || |||||||| || || ||| || Sbjct 4007271 ACCTATCCAACGAAATTCTTTGGTTGCGAGCTAGGTGCTCAGACTCAATTCGATTTTAAG 4007212 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| ||||||||||| ||||| || | | | || |||| || | ||||| Sbjct 4007211 AACGAACGCTTCATCGTCAACGGGAGCCACGATGCGTCAAAATTGCAAGATCTCCTTGAT 4007152 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || ||||| | |||| || |||||| | || |||||||| ||||| ||| | | Sbjct 4007151 GGTTTTATCAGGAAGTACGTCTTGTGTCCTAATTGTGATAACCCCGAGACTGAGTTACTC 4007092 Query 6495 GTGTCTACCAAGAGAAA---CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551 || || | ||| || |||||||| || || ||||| || |||||| | |||||| Sbjct 4007091 GT---TAACGCGAGGAAAGGTACCATCTCGCAAGGATGCAAGGCTTGCGGTCATCATGGC 4007035 Query 6552 AAGCTGGATTTATCA--CACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 | ||| || | || || || |||||||||| || |||||||||| || Sbjct 4007034 ATGCTAGA--AAGCAACCATAAGCTCAACACCTATATCTTGAAGAATCCGCC 4006985 >seq89 Length=3244750 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | |||||| || ||||| || || |||||||||||||||||| || ||| Sbjct 1691438 CCTCCTCTAAGACGCAATACTAAATGCAGTGTCGACTCCTTTTGAATATTGTAGTCTGAC 1691497 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || |||| || | ||||||||||| || || || || |||||||| | ||| Sbjct 1691498 AAAGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGCTGTTGATCTGGGGGA 1691557 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| |||||| |||||| || | | || || ||| || Sbjct 1691558 ATTCCTTCTTTGTCTTGAATTTTGGCCTTCACGTTTTCAATTGTGTCGGAGGCTTCGACC 1691617 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| || |||||||| |||| ||||| || || || ||||| Sbjct 1691618 TCAAGTGTGATGGTTTTACCTGTCAGAGTTTTGACAAAAATTTGCAT 1691664 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| ||||| |||||||| |||||| || || ||||| |||| Sbjct 1689818 TACCACCACGCAGACGCAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAG 1689877 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | ||||| || ||||| || || || || ||||| | | Sbjct 1689878 ACAGTGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAG 1689937 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||| || ||| ||||| | | ||| || | ||| | Sbjct 1689938 GAATGCCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATAGTGTCGGAAGCTTCCA 1689997 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || ||||| || || || || |||||||| Sbjct 1689998 CTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACAAAGATCTGCAT 1690046 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| || ||| || || ||||| | ||| ||| || ||||||||||| |||| Sbjct 1690752 TACCACCTCGCAGACGTAATACTAAATGCAAAGTTGACTCTTTCTGAATATTGTAGTCAG 1690811 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | |||||| || ||||| || || || ||||| || | | Sbjct 1690812 ATAGAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGTG 1690871 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || ||||| || ||| || || ||||| | | ||| || | ||||| Sbjct 1690872 GGATTCCCTCTTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCAA 1690931 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || ||||| ||||| || || |||| || || || || ||||||||| Sbjct 1690932 CCTCCAATGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCATG 1690981 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||| ||||| |||||||| ||| ||||| || || ||||| ||| Sbjct 1690982 CCACCACGAAGACGCAGAACCAAGTGAAGAGTTGACTCTTTTTGGATGTTATAATCTGAC 1691041 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || |||||||| || ||||| |||| || || || || | ||| Sbjct 1691042 AATGTGCGACCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGCTGGTCTGGAGGG 1691101 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| |||||| |||||||| | | || || ||| ||| Sbjct 1691102 ATGCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATTGTGTCAGATGCTTCGACT 1691161 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || |||||||| || || | ||| || || || || ||||| Sbjct 1691162 TCAAGAGTTATAGTTTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 1691208 Score = 102 bits (112), Expect = 5e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| || || ||| ||| ||||||||||| || | Sbjct 1691206 CATT-CCACCACGCAGACGGAGTACCAAGTGGAGGGTGGACTCTTTTTGAATATTATAGT 1691264 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| || | || || || || || || ||||| |||| || || ||||| | Sbjct 1691265 CCGACAATGTGCGACCATCTTCCAACTGCTTACCAGCAAAAATTAAACGCTGCTGATCTG 1691324 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||||| || || ||| ||||| | | || ||| | Sbjct 1691325 GTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCTGAGGCCT 1691384 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| || ||||| |||||||| ||||| ||||| || || || |||||| Sbjct 1691385 CGACTTCCAAAGTAATGGTTTTACCAGTCAATGTTTTAACAAAGATTTGCATG 1691437 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | || | || || ||| ||||| ||||| || ||||||| Sbjct 1691892 TACCACCTCTCAATCTGAGTACAAGGTGGAGTGTGGATTCCTTCTGAATGTTATAATCAG 1691951 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | || ||||| ||||| || | | || || || | || Sbjct 1691952 ACAAGGTGCGTCCATCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGG 1692011 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| |||||||| ||| ||| ||| ||||| | | || || || | Sbjct 1692012 GGATGCCCTCTTTGTCTTGAATCTTTGCCTTAACATTTTCAATGGTGTCGGATGCCTCGA 1692071 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || ||||| || |||||||| |||| || ||||| || |||||||| ||| Sbjct 1692072 CCTCCAATGTGATGGTTTTACCAGTCAGCGTCTTCACAAAGATCTGCATTTTT 1692124 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | | || | ||| || ||| || || ||||| |||||||| | Sbjct 1691664 TACCTCCTCTCAATCTGAGTACAAGATGCAGTGTGGATTCTTTCTGAATGTTGTAATCTG 1691723 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | ||| | || || ||||||||||| ||||| || | | || ||||| | | Sbjct 1691724 ACAGAGTGCGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTG 1691783 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || || |||||| ||| ||||||| | ||||||| | |||| Sbjct 1691784 GAATTCCCTCCTTATCTTGAATTTTGGCCTTAACATTCTCAATAGTATCTGAAGACTCAA 1691843 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || |||| || || || || || ||||| Sbjct 1691844 CCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 1691892 >seq24 Length=27704 Score = 109 bits (120), Expect = 4e-19 Identities = 74/83 (89%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 ||||| |||||||||||| ||||||||||||| || |||||||||||||| ||||| Sbjct 23903 TTGGCAGTGGTTTCGCTAAATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 23962 Query 25969 GCGCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||||||| Sbjct 23963 GCGCGTCACTAATTAGATGACGA 23985 >seq299 Length=323035 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 5/72 (7%) Strand=Plus/Minus Query 25925 TTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTA 25979 ||||||| ||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 239453 TTCGCTAAATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 239394 Query 25980 ATTAGATGACGA 25991 |||||||||||| Sbjct 239393 ATTAGATGACGA 239382 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 || ||| || | || | ||||||| ||||||||||||| || ||||||||||||| Sbjct 250327 GTACCCGTGTCAGTAGCTTCGCTAAATAGTAGATAGGGACAGTGGGAATCTCGTTAATCT 250268 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 250267 ATTCATGCGCGTCACTAATTAGATGACGA 250239 >seq336 Length=3726090 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||| || |||||||| | | ||| | || |||||||||||||| ||||| || Sbjct 1528382 TTTTGGATGTTGTAATCTTGGAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATC 1528441 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 | | ||| ||||| | || | ||||| || || ||||| ||| ||||| | Sbjct 1528442 AATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCA 1528501 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | |||||| ||| || || || |||||||||||||| ||||| ||||| || || Sbjct 1528502 ATAGTATCAGAGGCTTCGACCTCCAAGGTAATAGTTTTACCAGTCAAAGTTTTGACAAAG 1528561 Query 38310 ATCTGCATGTT-TTACAAGCT 38329 |||||||| || ||| || || Sbjct 1528562 ATCTGCATTTTGTTATAACCT 1528582 >seq19 Length=32169 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/89 (82%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 || ||| || | || | ||||||| || ||||||||| || |||||||||||||| Sbjct 2345 GTACCCGTGTCAGTAGCTTCGCTAAATGATAGATAGGGACAGTGGAAATCTCGTTAATCC 2286 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 2285 ATTCATGCGCGTCACTAATTAGATGACGA 2257 >seq256 Length=3517054 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||| | || |||||||| || ||||| |||||||||||||| || Sbjct 130784 ACCACCACGCAGACGAAGGACTAAATGAAGGGTAGATTCCTTCTGAATATTGTAATCGGA 130843 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| |||| | || || |||||||||||||| || || | | ||| || || | || Sbjct 130844 CAATGTACGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGAGG 130903 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || || ||||| ||| ||||| | | | || | ||||| Sbjct 130904 AATTCCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCAATGCTGTCAGCCGCATCAAC 130963 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || ||||| || || | |||||||| || || ||||| || Sbjct 130964 CTCAAGGGTGATGGTTTTTCCTGTGAGTGTTTTCACAAAGATTTGCATTTT 131014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945742665667