Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq34 239 6e-58 seq56 132 6e-26 >seq34 Length=2688268 Score = 239 bits (264), Expect = 6e-58 Identities = 401/577 (69%), Gaps = 5/577 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || | | ||||| ||| ||| || || ||||| ||||||| || ||||| | Sbjct 1149186 CCTCATCGCGAGAAATTAGTTCATTGCTGAAAGTAAGTCCTGGCATTAAACCTCGCTTCT 1149245 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||||||||||| ||||| ||| |||||||||||||| || || ||||| | Sbjct 1149246 TCAACCAAAATATGGCAGCAAAACTACCACTGAAGAAAATTCCTTCAACAGCTGCAAAAG 1149305 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 32859 | |||| || ||| || | || || | ||| ||||| || |||||| | | Sbjct 1149306 CTATAACTCGCTCAGCAAATGTAGCACTCTTATGACTGATCCAGTTCATAGCCCAGTTAG 1149365 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 32919 | ||||| | |||||||| | || || || ||||| || | |||| | | | Sbjct 1149366 CTTTCTTGGTAACACAAGGTAGAGTTTCAATTGCATTGAACAAGTAGTCCCTCTGAGATG 1149425 Query 32920 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 ||| ||| || |||||||| | ||| ||||||||| || || | ||||| |||| Sbjct 1149426 GATCAGTAATGTAGGTATCAATAAGAAGTGAATACATTTCTGAGTGCACATTTTCCATGG 1149485 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 | | ||| || || |||||||| | |||||| || | || ||||| | ||||| | Sbjct 1149486 CTACTTGGAAGCCATAGAAGCAGCGAGCCTCAGTGACTTGAACTTCCTGGCTGAATCGCT 1149545 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | | | ||||||||| || || || ||| ||| ||||| || || |||||||| | Sbjct 1149546 CAACGAGATTTTCATTGACAATGCCATCAGAGGCAGCAAAGAATGCTAATACATGAGAAA 1149605 Query 33100 TAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCC 33158 |||||| ||| |||| || || | || |||||| | ||||| || |||| || Sbjct 1149606 TAAAATGTTTCTCGT-TGTCATTCAACTTTGCCCAATCGTGCATATCCTTTGATAAGTCT 1149664 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 |||||||| || ||||||||||| ||||| || || || ||||| | ||| || ||| | Sbjct 1149665 ACTTCTTCGACCGTCCAAAATGAAGCCTCAGCTTTCTTGTACATGTGCCAAATATCAGGC 1149724 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||||||| ||||| || || || | | ||||||| Sbjct 1149725 CATTGAATGGGAAAGATCACGAAACGAGAAGGATTTT 1149761 >seq56 Length=4197193 Score = 132 bits (146), Expect = 6e-26 Identities = 181/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176 || ||||| |||||| || || |||| ||| | | ||| || || || || | | Sbjct 1121856 GCAATAATTTCATTCTTCATGTCTTCATCCCAAAGATCTCTTTCAGTCAAGTCTTTCAAA 1121797 Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 ||||| ||||| || | ||| ||||||||||| || ||||| || | |||||||||||| Sbjct 1121796 AGATGAGGATTGACGATTTGGAATTCTCCAGATAAGACTCTTCGTGAATAAATATTACTG 1121737 Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 || || || || | ||| || |||||||| | ||||| || || |||||||| ||||| Sbjct 1121736 GTGTAAGGCTCTATAGATTCGTTATTTCCAAGTATTTGTGCTGTCGATGCAGTAGGCATT 1121677 Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62356 ||||| | | ||| |||||| | || ||| ||||| |||| | || | || Sbjct 1121676 GGTGCAAGAAGTAATGAATTTCTCACTCCATATTGAGCAATTTTTGCTTTCAAAGCTGCC 1121617 Query 62357 CAATTCCAAAGAT 62369 |||| ||| |||| Sbjct 1121616 CAATCCCAGAGAT 1121604 Score = 102 bits (112), Expect = 1e-16 Identities = 261/398 (66%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| || || || ||||| || ||| | | ||| ||| || ||||| ||||| | Sbjct 1121225 TACCAATGGGCCTGTGTCTGAAGTTGGAGTTCTTAGCCTCTTTGATGGGATAGTAATTGA 1121166 Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711 | ||||| || ||| | ||||||| | || ||| | || || |||| ||| | | Sbjct 1121165 TGTCTATTATCCTATCTAAATTTCTGGTAGCAACCTTGGCAACTTCTTTCAATTTCATGA 1121106 Query 62712 AATCAAATCGCCC---------ATCTATT---ACAAACATGTTCAATGCAACAGATGCCA 62759 | ||| || | || |||| |||||||| || | |||| ||||||| Sbjct 1121105 AGTCATATGTGCGTTGATTTGGATTTATTTGGACAAACATATTAACAGCAATTGATGCCA 1121046 Query 62760 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62819 ||||||||| || || |||| || | || |||| | |||||| || | ||||| Sbjct 1121045 AATTACAAACTGCCACTTCATCAGGTGATGAGTACTGTACAACCTCAGTACATAAATTAC 1120986 Query 62820 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 ||| |||| || || |||||||||||||| || ||||| ||||| || || | Sbjct 1120985 TACTTCTGATTGTGCCCAAATTTTGTTGATTGGATTTACGATTACAAGCATCTTTGTATA 1120926 Query 62880 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 62939 ||| |||| || |||||||| | || || | || ||| |||| | | |||| Sbjct 1120925 ACATGTATGGTGTTCCAGTTTCTACTTGTGACATCAAAACAGCTGTCCATAAATCACGAG 1120866 Query 62940 CCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 62977 | | ||| |||||| | |||||| ||||||| Sbjct 1120865 CATCAATTTGTCGTTTGTAACGTTTTTCTTCTTCGTAT 1120828 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 61916 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 61975 ||||| || || || ||||| ||| ||||| | | || | || ||||| | | Sbjct 1122143 CTCCAACCATAGAAGTGCATGGACGTAAGTTTTTCAGTCGTAGGTTTAGCCATATGTACA 1122084 Query 61976 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTC 62035 || | ||||||| |||||| ||||| ||||| || |||||||||||||| | ||| ||| Sbjct 1122083 TTGAGAGATTGAGATTGATCAATGAAAGCTCCTCTATCTGCAGCCATTTTCAAAATAGTC 1122024 Query 62036 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 ||||| | |||||||||| ||| ||||| | | | || | ||| || || Sbjct 1122023 TTTTGGGATATTTCCCAAACAGTCTTATATAGTTGTTTCAGATCGTCGGG 1121974 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 63519 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63578 |||| ||||| || |||||| || || | || || ||||| | || ||||| | Sbjct 1120081 GTAG-TTGTATGTTTCAATAACTTTATCAAGATTTTCTTCATGAACAGCAACAGCGACTC 1120023 Query 63579 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 63638 ||| | ||| ||||| ||||||||||| | ||| || |||||||| || ||| | Sbjct 1120022 TCATGAGCATATGCTGTGGTCTTTCAACAACTTTGCCATTGATTTTCAATAAATAGCTTC 1119963 Query 63639 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 63698 | ||||| |||||||| ||||| ||||| ||| ||| |||| || || ||||| | | Sbjct 1119962 TCTCCAATGTTTTAAATCCAAAGTAGTTATATCCAAAATCTCTGTCATAGATAATTGCAG 1119903 Query 63699 AGTTGAGTTTATCCTT 63714 | || | |||||| || Sbjct 1119902 AATTCAATTTATCTTT 1119887 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || |||||||| ||||| ||||| || || | | ||| || | |||||| ||||| | Sbjct 1120525 TTACCTGTATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGA 1120466 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || || || | | |||| |||| || || ||||| || || | || | || |||||| Sbjct 1120465 TACATTGCAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTA 1120406 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| ||||| ||||| |||| | |||||| || Sbjct 1120405 TTATACACTCTTAACATAGGAACTAAACCATTAGA 1120371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 || ||| |||| ||| |||||| |||| | | || | ||||||||| || |||||| Sbjct 1121478 GAACCTTCATACGTAGAGTATGGACCTTTTTCTTTGGCAATTTCACAACTGGCTTCTAAT 1121419 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || ||||| || | ||||| ||||| | |||| || | || || || || || Sbjct 1121418 GCTCCGTAGTATAAAGTTTCAAAGATTTGAATATTAAGTTTCTGAGCCTCTTCACTCTCG 1121359 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 |||||||| | | | | ||| || || ||||| ||||||||||||||||| Sbjct 1121358 AATGGATATCTCATCAATAAAAATGCATCAGCTAAGCCTTGAACACCAATACC 1121306 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| || |||||||| |||| |||||| | ||||||||||| |||| ||| ||||| || Sbjct 1119695 TTTCTTGGTTTCTTTATGTAAATTTGAGATTGCTATTCTAGCAGCTAAAATTGCATAGTC 1119636 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 | ||||| |||||| ||||| || |||| || || | | || | ||| || || Sbjct 1119635 TGCATGTTTTGTAGTCATTGTGGCAGCGGTTTCAGCAGCTAAGTTATCAAGTTCCACAGT 1119576 Query 63940 TGTTACACCATTATATATTCCTTGGATAAC 63969 ||| || ||| ||| | || | |||||| Sbjct 1119575 TGTAACTCCAGAATAAAGCCCATTGATAAC 1119546 Score = 82.4 bits (90), Expect = 1e-10 Identities = 113/153 (74%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACAT-TGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 || || || || ||||| |||| || | || || |||||||||| ||||||||||| Sbjct 1120746 TCAAATTCTTCACCCCATACATCTGGCAAG-CCTGGACATTCATGAGGACACATCAAACT 1120688 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| | ||| | ||| |||| || ||| || | ||| || ||||| | ||| ||| | Sbjct 1120687 CCATTTTCCATTATCAAAGACTCTTTGCATGAATAAATCTGGGATCCACAAAGC-ATAGA 1120629 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 | || ||||||| ||||||||| || || |||| Sbjct 1120628 AAAGTTCTCTGGCTCTATGTTCTTCTTTGCCTG 1120596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629172417200