Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq89 107 2e-18 seq123 91.5 1e-13 >seq89 Length=3244750 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||||||||| |||| || |||||||| || | || ||| || | Sbjct 1691664 ATGCAAATTTTTGTCAAAACTCTGACAGGTAAAACCATCACACTTGAGGTCGAAGCCTCC 1691605 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || |||||| ||||||||||| ||||| |||||| Sbjct 1691604 GACACAATTGAAAACGTGAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGATCAA 1691545 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || |||| || || ||||| | ||||| | ||| || | || || ||| Sbjct 1691544 CAGCGTCTCATTTTCGCCGGAAAACAGCTTGAAGACGGTCGCACTTTGTCAGACTACAAT 1691485 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| || || ||||| |||||||| |||||||| | || |||| Sbjct 1691484 ATTCAAAAGGAGTCGACACTGCATTTAGTATTGCGTCTTAGAGGAGGCA 1691436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||||||||| || | || || ||||| || || | ||| ||| | Sbjct 1691209 AATGCAAATTTTTGTCAAGACCCTCACTGGAAAAACTATAACTCTTGAAGTCGAAGCATC 1691150 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | || ||| |||||| |||||||||||| | || || || Sbjct 1691149 TGACACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCA 1691090 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | |||| ||| || ||||||||||||||| | || || | |||||||| Sbjct 1691089 GCAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACATTGTCAGATTATAA 1691030 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || |||||||| || || || || || || ||||||| || ||||||| Sbjct 1691029 CATCCAAAAAGAGTCAACTCTTCACTTGGTTCTGCGTCTTCGTGGTGGCA 1690980 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || |||||||| || |||| || || ||||| ||| ||||| |||| | | Sbjct 1690046 ATGCAGATCTTTGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAAGCTTCC 1689987 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | || || || ||| |||||||||||| |||| ||||| Sbjct 1689986 GACACTATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 1689927 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||| | ||| || ||||| |||||||| || || | || || || Sbjct 1689926 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGACGCACACTGTCTGACTACAAC 1689867 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || || || |||||||||| ||||| Sbjct 1689866 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 1689820 >seq123 Length=3260300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| || ||||||||||| | || ||||| |||||||| ||||| ||| | Sbjct 712317 AAAATGCAGATCTTTGTCAAAACTTTAACTGGCAAGACCATTACTTTGGAAGTTGAAGCT 712258 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| || ||| | || ||| ||||| |||||||| || |||| ||| Sbjct 712257 TCTGATACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGAATTCCTCCAGAT 712198 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || ||| | || | || || ||||||||||||||| | ||| | |||||| Sbjct 712197 CAGCAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTTCAAGATTAT 712138 Query 111364 AATATACAAAAAG 111376 ||||||||||||| Sbjct 712137 AATATACAAAAAG 712125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423038159379400