Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq89 116 4e-21 seq45 100 3e-16 seq222 95.1 1e-14 seq343 87.8 2e-12 seq325 87.8 2e-12 seq347 86.0 7e-12 seq303 86.0 7e-12 seq112 86.0 7e-12 seq318 84.2 2e-11 >seq89 Length=3244750 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | |||||| || ||||||| ||| |||||||||||||||||| || | | Sbjct 1691438 CCTCCTCTAAGACGCAATACTAAATGCAGTGTCGACTCCTTTTGAATATTGTAGTCTGAC 1691497 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || |||| || ||||| || || ||||| ||||| ||||| || || | || Sbjct 1691498 AAAGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGCTGTTGATCTGGGGGA 1691557 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||| | ||| |||| | || | | | | |||||| | ||| || Sbjct 1691558 ATTCCTTCTTTGT-CTTGAATTTTGGCCTTCACGTTTTCAATTGTGTCGGAGGCTTCGAC 1691616 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || || || || ||||| |||||||| Sbjct 1691617 CTCAAGTGTGATGGTTTTACCTGTCAGAGTTTTGACAAAAATTTGCAT 1691664 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||||||| | || |||||| ||||| || ||||| | || || || | Sbjct 1690537 ACGCAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAATCTGAGAGTGTACGTCC 1690596 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||||||||| || || || ||||| ||||| | || | | ||||| Sbjct 1690597 ATCCTCCAACTGCTTACCAGCAAAAATTAGACGCTGTTGGTCTGGAGGGATACCTTCCTT 1690656 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| |||||| ||| | || | | || || | ||| || || | ||||| Sbjct 1690657 GTCCTGGATTTTGGCTTTCACATTCTCAATGGTATCAGAAGCTTCAACCTCCAAAGTGAT 1690716 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || ||||||||||| || ||||| Sbjct 1690717 GGTCTTACCAGTAAGAGTCTTTACAAAAATCTGCAT 1690752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| || || |||||||| || ||| || ||||||||||| |||| Sbjct 1690753 ACCACCTCGCAGACGTAATACTAAATGCAAAGTTGACTCTTTCTGAATATTGTAGTCAGA 1690812 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || || || || ||||| || ||||| ||||| ||||| | ||| Sbjct 1690813 TAGAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGTGG 1690872 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || | | ||| | || | ||||| | | | ||||| | ||| | Sbjct 1690873 GATTCCCTCTTTAT-CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCAA 1690931 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || ||||| || || ||||| ||||| || ||||| Sbjct 1690932 CCTCCAATGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 1690980 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| || ||||||| || || || | || || |||||||| || || || Sbjct 1691930 TCCTTCTGAATGTTATAATCAGACAAGGTGCGTCCATCTTCGAGCTGCTTTCCTGCAAAG 1691989 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | || ||||||||| | || | || ||| ||||| ||| | |||| | | | | Sbjct 1691990 ATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT-TGAATCTTTGCCTTAACATT 1692048 Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 || | ||||| | || || || | ||||||||||| || || |||||||| || Sbjct 1692049 TTCAATGGTGTCGGATGCCTCGACCTCCAATGTGATGGTTTTACCAGTCAGCGTCTTCAC 1692108 Query 42197 AAAGATTTGCATTTT 42211 |||||| |||||||| Sbjct 1692109 AAAGATCTGCATTTT 1692123 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| || | | || | ||||| |||| || || ||||| |||||||| | Sbjct 1691665 ACCTCCTCTCAATCTGAGTACAAGATGCAGTGTGGATTCTTTCTGAATGTTGTAATCTGA 1691724 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || | || || ||||| || || | || |||||| || | ||| Sbjct 1691725 CAGAGTGCGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGG 1691784 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCA 42159 | | |||||| || ||| |||| | | | | | | | | || || || || | Sbjct 1691785 AATTCCCTCCTTATCT-TGAATTTTGGCCTTAACATTCTCAATAGTATCTGAAGACTCAA 1691843 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || ||||| ||||| || || ||||| |||||||||||||| Sbjct 1691844 CCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 1691892 >seq45 Length=4254430 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 4043487 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4043546 Query 57058 TCACCACTATACTACCGAGGATT 57080 | ||||||||||||||||||||| Sbjct 4043547 TTACCACTATACTACCGAGGATT 4043569 >seq222 Length=7060343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3602900 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 3602841 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 3602840 TACTACCGAGGA 3602829 >seq343 Length=626199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 264882 AAAAAGTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 264825 Query 57058 TCACCACTATACTACCGAGGA-TTGAATATATAACTT 57093 | ||||||||||||| || || ||||||| | || || Sbjct 264824 TTACCACTATACTACTGAAGACTTGAATAGAGAAATT 264788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 202475 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 202532 Query 57058 TCACCACTATACTACCGAGGATT 57080 | ||||||||||||| || |||| Sbjct 202533 TGACCACTATACTACTGAAGATT 202555 >seq325 Length=5113970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 56984 AATTAACGTTTATG-AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGT 57042 || ||| || || | |||||| | ||| | || | |||||||||| |||||||||||| Sbjct 620669 AAATAAAGTATAGGCAAAAATATACTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGT 620610 Query 57043 GACAGGCGGACATACTCACCACTATACTACCGAGGATT 57080 ||||||||| ||||| ||||||||||||| || |||| Sbjct 620609 GACAGGCGGGGATACTGACCACTATACTACTGAAGATT 620572 >seq347 Length=8643572 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| ||||| | ||||| || | |||||||||| ||||||||||||||||||||| Sbjct 5046419 TTTACCAAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 5046476 Query 57052 ACATACTCACCACTATACTACCGAGGA-TTGAATAT 57086 ||||| ||||||||||||| || || ||||| || Sbjct 5046477 GGATACTGACCACTATACTACTGAAGACTTGAAAAT 5046512 >seq303 Length=5426051 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| ||||| | ||||| || | |||||||||| ||||||||||||||||||||| Sbjct 3613742 TTTACCAAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 3613685 Query 57052 ACATACTCACCACTATACTACCGAGGATT 57080 ||||| ||||||||||||| || |||| Sbjct 3613684 GGATACTTACCACTATACTACTGAAGATT 3613656 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 3982182 AAAAATTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3982125 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||| || || Sbjct 3982124 TGACCACTATACTACTGAAGA 3982104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 839841 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACTGAAGAT 839782 Query 57080 T 57080 | Sbjct 839781 T 839781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 3511501 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACTGAAGAT 3511442 Query 57080 T 57080 | Sbjct 3511441 T 3511441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 3614304 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACTGAAGAT 3614245 Query 57080 T 57080 | Sbjct 3614244 T 3614244 >seq112 Length=1966521 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 1139441 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1139498 Query 57058 TCACCACTATACTACCGAGGATTGAATATAT 57088 | ||||||||||||| || |||| |||||| Sbjct 1139499 TGACCACTATACTACTGAAGATT-CATATAT 1139528 >seq318 Length=1477034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 248182 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACTGAAGAT 248123 Query 57080 T 57080 | Sbjct 248122 T 248122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210375912880