Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq34 210 2e-49 seq56 163 3e-35 >seq34 Length=2688268 Score = 210 bits (232), Expect = 2e-49 Identities = 367/529 (69%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||| | |||| || || ||||| ||||| | |||||| ||| ||||| Sbjct 1149224 CCTGGCATTAAACCTCGCTTCTTCAACCAAAATATGGCAGCAAAACTACCACTGAAGAAA 1149283 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || ||||||||||| | | || || || | ||||| |||| | Sbjct 1149284 ATTCCTTCAACAGCTGCAAAAGCTATAACTCGCTCAGCAAATGTAGCACTCTTATGACTG 1149343 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| |||| ||||| | ||| ||||| | ||||| || | || || || | ||| Sbjct 1149344 ATCCAGTTCATAGCCCAGTTAGCTTTCTTGGTAACACAAGGTAGAGTTTCAATTGCATTG 1149403 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA--ACTG--TA 19256 || | || | || | || ||| ||| || | ||||||||| | || || Sbjct 1149404 AACAAGTAGTCCCTCTGAGATGGATCAGTAATGTAGG----TATCAATAAGAAGTGAATA 1149459 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||||||||| || | |||||| || || | || || || || || || | || || || Sbjct 1149460 CATTTCTGAGTGCACATTTTCCATGGCTACTTGGAAGCCATAGAAGCAGCGAGCCTCAGT 1149519 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 | || ||||| | |||| || || | ||||||||| || || |||||| || Sbjct 1149520 GACTTGAACTTCCTGGCTGAATCGCTCAACGAGATTTTCATTGACAATGCCATCAGAGGC 1149579 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC- 19435 ||||| |||||||||||||| |||||||||||| || | || || | | | || Sbjct 1149580 AGCAAAGAATGCTAATACATGAGAAATAAAATGTTTCTCGT-TGTCATTCAACTTTGCCC 1149638 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 |||| | ||||| || ||||| ||||||||||| || |||||||| |||||||| |||| Sbjct 1149639 AATCGTGCATATCCTTTGATAAGTCTACTTCTTCGACCGTCCAAAATGAAGCCTCAGCTT 1149698 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | || ||||||| ||| |||||| | |||| || ||||| || || || Sbjct 1149699 TCTTGTACATGTGCCAAATATCAGGCCATTGAATGGGAAAGATCACGAA 1149747 >seq56 Length=4197193 Score = 163 bits (180), Expect = 3e-35 Identities = 147/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 47279 CCAAAGTTTTCGTTCAGTTAATGTTTTTAAAAGATGAGGATTAACAATTTGAAATTCTCC 47338 |||||| | || |||||| || ||| |||||||||||||| || ||||| |||||||| Sbjct 1121827 CCAAAGATCTCTTTCAGTCAAGTCTTTCAAAAGATGAGGATTGACGATTTGGAATTCTCC 1121768 Query 47339 AGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCC 47398 ||||| ||||| || ||| |||||||| || || || ||||||||||| |||||||| Sbjct 1121767 AGATAAGACTCTTCGTGAATAAATATTACTGGTGTAAGGCTCTATAGATTCGTTATTTCC 1121708 Query 47399 AAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCC 47458 || ||||| || || ||||| |||||||| | ||||| | ||| |||||| ||||| Sbjct 1121707 AAGTATTTGTGCTGTCGATGCAGTAGGCATTGGTGCAAGAAGTAATGAATTTCTCACTCC 1121648 Query 47459 ATATT 47463 ||||| Sbjct 1121647 ATATT 1121643 Score = 125 bits (138), Expect = 8e-24 Identities = 203/290 (70%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 |||| |||| || |||||||| || | || || |||||||| ||||| | ||| |||| Sbjct 1120518 TATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAAGATACATTG 1120459 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | ||||| | |||||||||||||| || | ||| | || || || ||||| | Sbjct 1120458 CAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGTTATTATACA 1120399 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||||||||| || || | |||||| || | ||||| ||||| | ||| | || Sbjct 1120398 CTCTTAACATAGGAACTAAACCATTAGAAACTCCATTTGTTCCGGCAATTCTTGTACCCT 1120339 Query 48457 TAGCTCTTATATT----ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGA 48512 | ||||| || | || | | || ||| || || || || |||| || |||| Sbjct 1120338 TGGCTCTGATTGTGTGGAC--ACTCAA--ACCAATGCCTCCAGCAGATTTACTTACTAGA 1120283 Query 48513 GCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 ||||| | || | || |||||||| ||||| |||||||| || |||| Sbjct 1120282 GCACATCTCTTTAATGTGTCATAAATACCTTCAATACTATCTTCAGTCAT 1120233 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 |||||| | | || |||||||||||||| ||| | || || ||| | | | | Sbjct 1120090 CTCTGACATGTAGTTGTATGTTTCAATAACTTTATCAAGATTTTCTTCATGAACAGCAAC 1120031 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 || || | ||| | ||||| || ||||||||||||| |||| ||| |||||||| | Sbjct 1120030 AGCGACTCTCATGAGCATATGCTGTGGTCTTTCAACAACTTTGCCATTGATTTTCAATAA 1119971 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT 48823 ||| | | |||||||||||||| ||||| ||||| ||| ||| || | |||| || Sbjct 1119970 ATAGCTTCTCTCCAATGTTTTAAATCCAAAGTAGTTATATCCAAAATCTCTGTCATAGAT 1119911 Query 48824 AATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||||| ||||| | | | || || || || Sbjct 1119910 AATTGCAGAATTCAATTTATCTTTGTGCTT 1119881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 8/176 (5%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG--ATTAG 47922 |||||| |||||| || || ||||| | |||||| || || || |||| || || || Sbjct 1121073 ACAAACATATTAACAGCAATTGATGCCAAATTACAAACTGCCACTTCATCAGGTGATGAG 1121014 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 || |||| | |||| ||||| ||||| || | |||| || ||||||||||| |||| Sbjct 1121013 TAC--TGTACAACCTCAGTACATAAATTACTACTTCTGATTGTGCCCAAATTTTGTTGAT 1120956 Query 47983 T--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036 | ||| ||||| || || ||||| | ||| | |||||||||||||||| Sbjct 1120955 TGGATTTACG--ATTACAAGCATCTTTGTATAACATGTATGGTGTTCCAGTTTCTA 1120902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106291589480