Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq89 167 4e-36 seq336 141 2e-28 seq256 141 2e-28 seq222 120 5e-22 seq1 87.8 3e-12 >seq89 Length=3244750 Score = 167 bits (184), Expect = 4e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| |||||||||| ||||| ||||||| ||| | ||||| ||| || Sbjct 1691656 AATTTGCATACCTCCTCTCAATCTGAGTACAAGATGCAGTGTGGATTCTTTCTGAATGTT 1691715 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || ||||||||||| ||||| || |||||||| || Sbjct 1691716 GTAATCTGACAGAGTGCGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGCTG 1691775 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||| || |||||||| ||||||| || | ||| ||||||||| || Sbjct 1691776 ATCTGGTGGAATTCCCTCCTTATCTTGAATTTTGGCCTTAACATTCTCAATAGTATCTGA 1691835 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || || || || || || || || || || ||||| |||||||| Sbjct 1691836 AGACTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 1691892 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | || || ||||||| || | || | |||||| |||||| Sbjct 1691200 AATTTGCATTCCACCACGCAGACGGAGTACCAAGTGGAGGGTGGACTCTTTTTGAATATT 1691259 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || || || | | ||| || || || || || ||||||||||| | ||| || Sbjct 1691260 ATAGTCCGACAATGTGCGACCATCTTCCAACTGCTTACCAGCAAAAATTAAACGCTGCTG 1691319 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| || |||| || | |||| ||| || || || Sbjct 1691320 ATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCTGA 1691379 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| | ||| || |||||||| || | ||||| ||||| |||||||| Sbjct 1691380 GGCCTCGACTTCCAAAGTAATGGTTTTACCAGTCAATGTTTTAACAAAGATTTGCAT 1691436 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | || | ||| | ||||| ||| | ||| || |||||| Sbjct 1691429 ATTTGCATGCCTCCTCTAAGACGCAATACTAAATGCAGTGTCGACTCCTTTTGAATATTG 1691488 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | | || || | ||||||||||| ||||| | | ||||||| Sbjct 1691489 TAGTCTGACAAAGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGCTGTTGA 1691548 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||| ||||||| || | ||| ||| || ||||| Sbjct 1691549 TCTGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTCACGTTTTCAATTGTGTCGGAG 1691608 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || ||||||||||| || ||||| ||||| |||||||| Sbjct 1691609 GCTTCGACCTCAAGTGTGATGGTTTTACCTGTCAGAGTTTTGACAAAAATTTGCAT 1691664 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| || || | ||| | |||||| || | |||||| |||||| ||||| Sbjct 1690751 ATACCACCTCGCAGACGTAATACTAAATGCAAAGTTGACTCTTTCTGAATATTGTAGTCA 1690810 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||| || | | ||| || | |||||| || ||||| || | | |||||| || || Sbjct 1690811 GATAGAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGT 1690870 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||||||||| || || | ||| | |||| |||||| || |||| ||| Sbjct 1690871 GGGATTCCCTCTTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCA 1690930 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || ||||| || || || || || || ||||| || ||||| Sbjct 1690931 ACCTCCAATGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 1690980 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| || | || | |||||| || ||||| || || || || | | | Sbjct 1690994 CGCAGAACCAAGTGAAGAGTTGACTCTTTTTGGATGTTATAATCTGACAATGTGCGACCA 1691053 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| || ||||||||||| | ||| || || ||||| || |||||||| Sbjct 1691054 TCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGCTGGTCTGGAGGGATGCCTTCTTTG 1691113 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | ||| | |||| ||| || || || | || ||||| ||||||||| Sbjct 1691114 TCCTGAATTTTAGCTTTCACATTTTCAATTGTGTCAGATGCTTCGACTTCAAGAGTTATA 1691173 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || ||||| ||||||||| Sbjct 1691174 GTTTTTCCAGTGAGGGTCTTGACAAAAATTTGCATT 1691209 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| ||||| || || | ||| | || || ||| ||| Sbjct 1691885 ATTTGCATACCACCTCTCAATCTGAGTACAAGGTGGAGTGTGGATTCCTTCTGAATGTTA 1691944 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || || || | ||| || | || ||||| ||||| || |||||||| || Sbjct 1691945 TAATCAGACAAGGTGCGTCCATCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGG 1692004 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||| ||||| || || | || | |||| ||| || ||||| Sbjct 1692005 TCTGGGGGGATGCCCTCTTTGTCTTGAATCTTTGCCTTAACATTTTCAATGGTGTCGGAT 1692064 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| || || | || || |||||||| || ||||| || ||||| || |||||||| Sbjct 1692065 GCCTCGACCTCCAATGTGATGGTTTTACCAGTCAGCGTCTTCACAAAGATCTGCATTTT 1692123 >seq336 Length=3726090 Score = 141 bits (156), Expect = 2e-28 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||||||||||||| ||||| || ||||| || ||||| ||||| |||||||| || Sbjct 1528414 ATCTTCTAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTT 1528473 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| ||||||| || | |||| ||||||||| || | || || || | || || Sbjct 1528474 ATCTTGGATTTTGGCCTTGACATTTTCAATAGTATCAGAGGCTTCGACCTCCAAGGTAAT 1528533 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTA 193367 ||||||||| || | ||||| ||||| || |||||||| ||| Sbjct 1528534 AGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATTTTGTTA 1528576 >seq256 Length=3517054 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || ||||| || | ||| | |||| || || |||||| || ||||| Sbjct 130784 ACCACCACGCAGACGAAGGACTAAATGAAGGGTAGATTCCTTCTGAATATTGTAATCGGA 130843 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || |||||||||||||| || || ||||| || || || ||||| Sbjct 130844 CAATGTACGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGAGG 130903 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| |||||||| ||||||| || | |||| ||| | || | | ||||| Sbjct 130904 AATTCCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCAATGCTGTCAGCCGCATCAAC 130963 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 130964 CTCAAGGGTGATGGTTTTTCCTGTGAGTGTTTTCACAAAGATTTGCATTTT 131014 >seq222 Length=7060343 Score = 120 bits (132), Expect = 5e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||| |||||||| || ||||| || ||||| ||||| ||||||||||| Sbjct 1553893 ATCTTCCAATTGTTTACCGGCAAAGATCAATCTTTGCTGATCTGGAGGGATTCCTTCTTT 1553952 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || ||||| | || | |||| |||||| || || | |||||| || | || || Sbjct 1553953 ATCCTGGATTTTAGCCTTGACATTTTCAATAGTGTCAGAGGCCTCAACCTCCAAGGTGAT 1554012 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || | ||||| ||||| || ||||| || Sbjct 1554013 GGTCTTACCAGTCAAAGTTTTAACAAAAATCTGCATATT 1554051 >seq1 Length=8792355 Score = 87.8 bits (96), Expect = 3e-12 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 193252 GTATT-CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 ||||| ||||| || ||||| ||||||| ||| | |||| ||| | ||| | | ||| Sbjct 1064488 GTATTACCTTCCTTGTCTTGGATTTTGGCTTTAACATTTTCAATCGAATCAGCCGCATCA 1064429 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || ||||| || |||| ||||| ||||| ||||||||||| Sbjct 1064428 ACTTCAAGAGTGATGGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATTTT 1064376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650385292240