Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq89 168 5e-37 seq123 163 2e-35 seq336 141 7e-29 seq256 122 7e-23 seq222 118 8e-22 seq1 109 4e-19 >seq89 Length=3244750 Score = 168 bits (186), Expect = 5e-37 Identities = 172/219 (79%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 |||||| ||||| ||||| || || |||||||| ||||||||||| | |||| |||||| Sbjct 1690993 ACGCAGAACCAAGTGAAGAGTTGACTCTTTTTGGATGTTATAATCTGACAAT-GTGCGAC 1691051 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| |||||| | || || | ||||| || || || || || |||| Sbjct 1691052 CATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGCTGGTCTGGAGGGATGCCTTCTT 1691111 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 |||| || |||||| | ||| ||| |||| | |||||||| ||| |||||||||||| Sbjct 1691112 TGTCCTG-AATTTTAGCTTTCACATTTTCAATTGTGTCAGATGCTTCGACTTCAAGAGTT 1691170 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| ||||| | ||| || ||||| || |||||| Sbjct 1691171 ATAGTTTTTCCAGTGAGGGTCTTGACAAAAATTTGCATT 1691209 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | || || | ||| || ||||||||||| |||||||| ||||| | Sbjct 1691666 CCTCCTCTCAATCTGAGTACAAGATGCAGTGTGGATTCTTTCTGAATGTTGTAATCTGAC 1691725 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || | |||||| |||||| | |||||||| |||||||| || ||| Sbjct 1691726 AGAGTGCGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGA 1691785 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || ||||| |||||| | || ||| | || | ||| || ||| || || Sbjct 1691786 ATTCCCTCCTTATCTTG-AATTTTGGCCTTAACATTCTCAATAGTATCTGAAGACTCAAC 1691844 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | || || ||||| || ||||| Sbjct 1691845 CTCAAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 1691892 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 ||| || | || ||| || ||||| || || ||||| ||||||||||| ||||| |||| Sbjct 1691209 TCCACCACGCAGACGGAGTACCAAGTGGAGGGTGGACTCTTTTTGAATATTATAGTCCGA 1691268 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| |||||| ||| || | || || |||||| | || || | |||||||| || | Sbjct 1691269 CAAT-GTGCGACCATCTTCCAACTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGTG 1691327 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | || || ||||||||||| | || |||||| |||| | ||||| || || | Sbjct 1691328 GGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCTGAGGCCTCGA 1691387 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | ||| || ||||| ||||| || ||||||||||| || ||||| Sbjct 1691388 CTTCCAAAGTAATGGTTTTACCAGTCAATGTTTTAACAAAGATTTGCAT 1691436 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || | || || |||||||| || |||||||||||||| | Sbjct 1691894 CCACCTCTCAATCTGAGTACAAGGTGGAGTGTGGATTCCTTCTGAATGTTATAATCAGAC 1691953 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || || || ||| | |||||||| ||||| || || || Sbjct 1691954 AAGGTGCGTCCATCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGG 1692013 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||||||||| ||| |||| || ||| |||| | ||||| || || || Sbjct 1692014 ATGCCCTCTTTGTCTTG-AATCTTTGCCTTAACATTTTCAATGGTGTCGGATGCCTCGAC 1692072 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || ||||| ||||| | || || ||||| ||||||||||| Sbjct 1692073 CTCCAATGTGATGGTTTTACCAGTCAGCGTCTTCACAAAGATCTGCATTTT 1692123 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| ||||| ||||| || || || || || ||||| || || | Sbjct 1689820 CCACCACGCAGACGCAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAC 1689879 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || ||||| |||||| | || | | |||||||| || ||| Sbjct 1689880 AGTGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGA 1689939 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | |||||| |||| | |||||| ||| ||| || Sbjct 1689940 ATGCCTTCTTTGTCTTG-AATCTTGGCCTTGACATTTTCAATAGTGTCGGAAGCTTCCAC 1689998 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || || || || || || || ||||| |||||||| Sbjct 1689999 TTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACAAAGATCTGCAT 1690046 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| | || ||||| | || || ||||| ||||| || || || | Sbjct 1690754 CCACCTCGCAGACGTAATACTAAATGCAAAGTTGACTCTTTCTGAATATTGTAGTCAGAT 1690813 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||||||||||||| | || | | || || || || || Sbjct 1690814 AGAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGG 1690873 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||| ||||| ||| || | ||||||| |||| | |||||||||| ||| || Sbjct 1690874 ATTCCCTCTTTATCTTG-AATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCAAC 1690932 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||| |||||||| | || || ||||| |||||||| Sbjct 1690933 CTCCAATGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 1690980 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||||||| || || || || || |||||||||||||| | Sbjct 1690526 CCACCACGCAGACGCAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAATCTGAG 1690585 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | || || |||||| | || | | || || || || || Sbjct 1690586 AGTGTACGTCCATCCTCCAACTGCTTACCAGCAAAAATTAGACGCTGTTGGTCTGGAGGG 1690645 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | ||| ||| ||| | || | || |||||| ||| || Sbjct 1690646 ATACCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAATGGTATCAGAAGCTTCAACC 1690705 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || ||||| | || || ||||| |||||||| Sbjct 1690706 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTTACAAAAATCTGCAT 1690752 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||||| || ||||| || || || || |||||||| || || || | Sbjct 1691438 CCTCCTCTAAGACGCAATACTAAATGCAGTGTCGACTCCTTTTGAATATTGTAGTCTGAC 1691497 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || ||||| || || | || | | || ||||| || ||| Sbjct 1691498 AAAGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGCTGTTGATCTGGGGGA 1691557 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| |||||| | || || |||| | ||||| || ||| || Sbjct 1691558 ATTCCTTCTTTGTCTTG-AATTTTGGCCTTCACGTTTTCAATTGTGTCGGAGGCTTCGAC 1691616 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 1691617 CTCAAGTGTGATGGTTTTACCTGTCAGAGTTTTGACAAAAATTTGCAT 1691664 >seq123 Length=3260300 Score = 163 bits (180), Expect = 2e-35 Identities = 152/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||| || |||||||| || |||||| ||| || | |||||| ||||| | | Sbjct 712125 CTTTTTGTATATTATAATCTTGAAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGA 712184 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 |||| || |||||||| || ||||| |||||||||||||| | ||| ||||||| ||| Sbjct 712185 TCAACCTCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTAGCTTTGACATTTT 712244 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||| |||||| ||| ||||| | ||| || || ||||||||||| ||||| |||| Sbjct 712245 CAATAGTATCAGAAGCTTCAACTTCCAAAGTAATGGTCTTGCCAGTTAAAGTTTTGACAA 712304 Query 29777 ATATCTGCATTTT 29789 | ||||||||||| Sbjct 712305 AGATCTGCATTTT 712317 >seq336 Length=3726090 Score = 141 bits (156), Expect = 7e-29 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||| ||||| ||||| | || ||| ||| || | |||||| |||||| | | Sbjct 1528380 CTTTTTGGATGTTGTAATCTTGGAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGA 1528439 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 ||||||||||||||||||| ||||| || || || ||||| | ||| |||||| ||| Sbjct 1528440 TCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACATTTT 1528499 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||| ||||| ||| || || | || |||||||| ||||| || ||||| |||| Sbjct 1528500 CAATAGTATCAGAGGCTTCGACCTCCAAGGTAATAGTTTTACCAGTCAAAGTTTTGACAA 1528559 Query 29777 ATATCTGCATTTT 29789 | ||||||||||| Sbjct 1528560 AGATCTGCATTTT 1528572 >seq256 Length=3517054 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | || ||| || || |||||||| || ||||| || ||||| || ||||| | | Sbjct 130785 CCACCACGCAGACGAAGGACTAAATGAAGGGTAGATTCCTTCTGAATATTGTAATCGGAC 130844 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | || ||| || | |||||| || || | |||||||||||||| || || || Sbjct 130845 AATG-TACGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGAGG 130903 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || || ||||| | ||| |||||| |||| | |||||| || || Sbjct 130904 AATTCCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCAATGCTGTCAGCCGCATCAAC 130963 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || ||||| || || | ||||| ||||| || |||||||| Sbjct 130964 CTCAAGGGTGATGGTTTTTCCTGTGAGTGTTTTCACAAAGATTTGCATTTT 131014 >seq222 Length=7060343 Score = 118 bits (130), Expect = 8e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || || || ||||| || ||| ||| ||| || | |||||| || ||| | | Sbjct 1553859 CTTTCTGGATATTGTAATCTTGAAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGA 1553918 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 |||||||||||||||| || || || || ||||| || || | ||| |||||| ||| Sbjct 1553919 TCAATCTTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGGATTTTAGCCTTGACATTTT 1553978 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||||||||| || || || | || || || || ||||| || |||||||||| Sbjct 1553979 CAATAGTGTCAGAGGCCTCAACCTCCAAGGTGATGGTCTTACCAGTCAAAGTTTTAACAA 1554038 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 1554039 AAATCTGCATATT 1554051 >seq1 Length=8792355 Score = 109 bits (120), Expect = 4e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||| || || || | ||||| || |||||||| ||||||||||| || | | Sbjct 1064701 CCACCCCTCAACCGAAGGACAAGGTGAAGGGTTGATTCTTTCTGAATGTTATAGTCTGAA 1064642 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| ||||||||||| |||||| | || |||||||||||||| || ||| Sbjct 1064641 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCAAAGATTAATCTTTGCTGATCTGGAGGA 1064582 Query 29680 ATACC 29684 || || Sbjct 1064581 ATTCC 1064577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 |||| || |||||||| | ||| ||| ||| |||| | | |||| || |||| Sbjct 1064484 TACCTTCCTTGTCTTGGATTTTGGCTTTAACATTTTCAATCGAATCAGCCGCATCAACTT 1064425 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||| || ||||| |||||||||||||||||||| || |||||||| Sbjct 1064424 CAAGAGTGATGGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATTTT 1064376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217523935337