Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 302 3e-76 seq100 136 3e-26 seq89 111 1e-18 seq298 104 2e-16 >seq1 Length=8792355 Score = 302 bits (334), Expect = 3e-76 Identities = 851/1291 (66%), Gaps = 22/1291 (2%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || || || ||| | |||| ||||| | ||||| |||||||| | ||| || || ||| Sbjct 4238083 GTCGACTTGTCAACAGCAGAGACATTTAAGATACCGTTGGCATCAATATCGAAGGTAACT 4238142 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || |||||||| || |||| | ||||||||||| || | | ||| |||| ||| Sbjct 4238143 TCGATTTGAGGAACACCTCGTGGTGCAGGTGGGATGCCACTGAGTTCAAACTTTCCAAGA 4238202 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 || ||||| || || | ||||| || || | | ||| ||| || | | Sbjct 4238203 AGGTTGTTATCCTTGGTCATGGCACGTTCTCCTTCATAGACTTGAATAAGTACACCGGGC 4238262 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 281649 || || || | |||||| || || |||| ||| || || || || || ||||| Sbjct 4238263 TGGTTGTCAGCATAAGTGGTGAAGG-TCTGAGTTTGCTTGGTGGGGATAGTGGTATTTCT 4238321 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 | || | | ||||| | |||||||| ||||| | ||||||||| ||||||||||| Sbjct 4238322 CTTGATCAGAGCAGTCATGACTCCACCAGCGGTTTCAATACCAAGAGATAGAGGAGTGAC 4238381 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 ||| | || | | | |||| || |||| | | |||| |||| ||||| || || Sbjct 4238382 ATCGAGGAGAAGTAAGTCCTGAACTTCTTCAGACTTGTCACCAGCAAGGATAGCAGCCTG 4238441 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 281829 | |||||| ||||| |||||||| ||||||||||| | | || || |||| || || Sbjct 4238442 CACAGCAGCGCCATAGGCAACAGCCTCATCAGGATTGATCGATTTGTTGAGTTCCTTGCC 4238501 Query 281830 ATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTA 281888 |||||| || | | |||||| | ||| | || || ||||| | ||||| ||||| | Sbjct 4238502 ATTGAAGAAGTCTTGAAGAAGCT-TCTGGATTTTGGGGATACGGGTAGATCCACCAACAA 4238560 Query 281889 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 281948 || || ||||| | ||| | ||||||| || | || | | || ||||||| Sbjct 4238561 GGACGATGTCATGAATCTGAGCCTTATCCATCTTGGCGTCGCGCAGAGACTTCTCAACGG 4238620 Query 281949 GTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 282008 | |||||| | | |||||||| | ||| || ||||| || |||||| || | | Sbjct 4238621 GCTCAAGAGTGCCACGGAACAAGTCAGCACAGAGCTCTTCAAAACGAGCTCTGGTGATCG 4238680 Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 | | ||||||| || || | | |||||| | ||||| | | |||||| || | Sbjct 4238681 AGGTGTAGAAATCAATACCCTCATAGAGAGAATCGATCTCAATGCTGGCTTGAGTAGATG 4238740 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCT-GTCCTTAGTCTTCGTAAGGCTTTTGCT 282127 |||| || | ||| || || | |||||| ||| || | | | || | ||| ||| Sbjct 4238741 AAGAAAGAGTACGCTTCGCTCTTTCACA-GCTAGTGCGCAAACGACGGAGGGC--ACGCT 4238797 Query 282128 GATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAA 282185 |||| ||| |||| | || || || | ||||| || | ||| | | || | Sbjct 4238798 TATTGGCGGTCAGATCTTTCTTGTACTTGCGTTTGAACTCCTGCACAAAGTGGTTGACCA 4238857 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 || || || || |||||||| ||||| | ||||| || | |||| | || | | Sbjct 4238858 TGCGGTTGTCGAAGTCTTCACCACCCAAGTGAGTATCACCAGCGGTAGACTTGACCTCAA 4238917 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | |||||||| | | || || | ||||||| ||| |||||||| | ||| |||| Sbjct 4238918 AGATACCATCTTCGATGGTCAGAATGGAAACATCAAAGGTGCCACCACCAAGATCGAAAA 4238977 Query 282306 TAAGTACATT---CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 | || || || | | || || || || || |||||||| |||| |||||||| Sbjct 4238978 TGAGCACGTTGCGCTCACCAGTGGCT---TTCTTGTCGAGACCATAGGCAATAGCAGCAG 4239034 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 |||| |||||||| || || | || ||| || | || | || | || || || || | Sbjct 4239035 CAGTAGGTTCATTGATGATACGCAGAACGTTCATGCCTGAGATGGTACCAGCGTCCTTGG 4239094 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 | || || | || || ||||| ||||| || ||||| || || ||||| || || Sbjct 4239095 TTGCCTGACGCTGCGAGTCGTTGAAATAAGCGGGAACGGTGATCACGGCGCTGGTGACGG 4239154 Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 || |||| ||||| || |||| ||||| || | | ||| || | || Sbjct 4239155 TCTTACCAAGGTAAGCCTCAGCAGTTTCCTTCATCTTGACCAGGACCATCGAACTCACTT 4239214 Query 282543 GTTCTGG--AGAATATTGCTTGGATTCATTTTGATA-TGATACTTCAAAATATGGTTTAT 282599 ||| || |||| | ||| | ||| || ||| ||| |||| || | ||||| Sbjct 4239215 CTTCGGGGTAGAAGGT--CTTCGTTTCTCCTTTATACTGA-ACTTGAATCTTAGGTTTGC 4239271 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 |||| || | | ||| || || ||||||| |||||| || | ||||||| | || | Sbjct 4239272 CACCATCACTGACAACATTGAAGGGCCAATGTTTCATGTCAGCTTGAACAGTAGCATCGT 4239331 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATC 282690 |||| | |||||| | || || ||||| Sbjct 4239332 CAAAACGACGACCAATGAGACGCTTGGCATC 4239362 Score = 102 bits (112), Expect = 6e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||||||||||| |||| || | ||| | || | ||| || ||||| || || ||| Sbjct 4239658 CAAAAATAGTATTGTTTGGGTTCATGGCAACCTGGTTTTTAGCAGCATCGCCGATGAGAC 4239717 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 | || || || ||||| | |||||| || || ||||| ||||| || || || || | Sbjct 4239718 GCTCAGTGTCGGTAAAAGCAACATAACTGGGCGTAGTGCGGTTACCCTGGTCGTTAGCGA 4239777 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 ||||||| || || || | ||| | ||||| || || | || ||||| | ||||| Sbjct 4239778 TAATTTCGACCTTTCCGTGTTGAAACACACCGACGCACGAGTAGGTGGTTCCAAGATCAA 4239837 Query 282870 TACCAA 282875 |||||| Sbjct 4239838 TACCAA 4239843 >seq100 Length=4649179 Score = 136 bits (150), Expect = 3e-26 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| ||||||| | || ||||| |||||||||||||| |||||||| || | Sbjct 398429 TTTATCTTCAGTTTTATCCATGCCGTACGCTAAAGCAGCAGCAGTAGGTTCATTGATTAC 398488 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 ||| || ||||| | || |||||| || |||||||| ||||| ||||| || || || Sbjct 398489 TCTTAAGACATTTAATCCTGCAATTTGACCAGCATCTTTGGTGGCCTGTCTCTGCGAGTC 398548 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 |||||||||||||||||||| | ||| |||| | ||||| Sbjct 398549 ATTAAAATATGCAGGAACAGTGACAACTGCATTTTTTACT 398588 Score = 102 bits (112), Expect = 6e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATT-TTAAGAACATCTAAACCCGC 86177 ||||| || | ||| || ||||| |||||||| |||| | |||||| ||| ||| || || Sbjct 398451 CCGTACGCTAAAGCAGCAGCAGTAGGTTCATTGATTACTCTTAAGA-CATTTAATCCTGC 398509 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 ||||| | ||| ||| || || |||||||| | ||||||||||||||| || ||||| Sbjct 398510 AATTTGACCAGCATCTTTGGTGGCCTGTCTCTGCGAGTCATTAAAATATGCAGGAACAGT 398569 Query 86238 AATAACTGCTTTATT 86252 | |||||| || || Sbjct 398570 GACAACTGCATTTTT 398584 >seq89 Length=3244750 Score = 111 bits (122), Expect = 1e-18 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 432279 AGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATG 432338 ||||||| |||||||||||||| |||||||| || | ||||| || ||||| ||| | Sbjct 2610270 AGATTGAAGGGTAAAGAAGGTCGCATTAGAGGTAACCTTATGGGTAAACGTGTAGATTTT 2610211 Query 432339 TCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCT 432398 ||||||||||||||||| || ||||||| ||| | || || |||||||||| || Sbjct 2610210 TCTGCACGTACAGTTATCACACCTGATCCAAATTTGAGAATCGATCAAGTTGGTGTACCA 2610151 Query 432399 CTCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 | | ||| || |||| | ||||| |||||||| || Sbjct 2610150 CGAAGTATCGCACAAAACTTGACTTTCCCAGAAATTGTCAC 2610110 >seq298 Length=2495523 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 637112 CAAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGAC 637171 |||| | | || |||| || | ||| |||||| |||| || |||||||| |||| | Sbjct 1656967 CAAAAACAGTTCTTGTAGACTTTTCAAGCCCAAATGTTGCCAAGGAAATGCACGTTGGTC 1656908 Query 637172 ATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACG 637231 || | ||||| |||||||||||||| ||| | ||| |||| ||| | | ||||| Sbjct 1656907 ATCTGAGATCTACTATTATTGGTGAGAGTATCAGCAGGTTATTGGAATTTTTGGGACATA 1656848 Query 637232 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTT 637291 | || | | || || ||| | ||||||||||| ||||| || || |||||||| ||| Sbjct 1656847 AAGTATTGAGAATCAACCATATTGGTGATTGGGGTACTCAGTTTGGAATGTTAATAGCTC 1656788 Query 637292 AT 637293 || Sbjct 1656787 AT 1656786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740612872808682