Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq34 237 1e-57 seq211 109 4e-19 seq303 86.0 5e-12 >seq34 Length=2688268 Score = 237 bits (262), Expect = 1e-57 Identities = 415/592 (70%), Gaps = 19/592 (3%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| | |||||||| ||| | || || | ||||| ||||||| | ||| || ||| Sbjct 1149771 TTGCTCAAGGAAAATCCTTCTCGTTTCGTGATCTTTCCCATTCAATGGCCTGATATTTGG 1149712 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| ||||| |||| ||||||||||| | |||||||| || || | || Sbjct 1149711 CACATGTACAAGAAAGCTGAGGCTTCATTTTGGACGGTCGAAGAAGTAGACTTATCAAAG 1149652 Query 43796 GACTTAGCAC-ATTGGATTGCAT--TAAAACCACAA-GAAAAACATTTTATATCTTTGGT 43851 || | |||| ||||| ||| | || |||| || ||||||||||| ||| || Sbjct 1149651 GATAT-GCACGATTGG---GCAAAGTTGAATGACAACGAGAAACATTTTATTTCTCATGT 1149596 Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911 || || || |||||||| || || || |||||||||||| | ||| || || Sbjct 1149595 ATTAGCATTCTTTGCTGCCTCTGATGGCATTGTCAATGAAAATCTCGTTGAGCGATTCAG 1149536 Query 43912 GCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 || ||||||||| | | || || || || || ||||| || ||| | ||||| ||||| Sbjct 1149535 CCAGGAAGTTCAAGTCACTGAGGCTCGCTGCTTCTATGGCTTCCAAGTAGCCATGGAAAA 1149476 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 | | || || |||||||| ||||| || ||||| ||||| | ||| ||| Sbjct 1149475 TGTGCACTCAGAAATGTATTCACTTCTTATTGATACCTACATTACTGATCCATCTCAGAG 1149416 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 | | ||||| ||||| || ||||| ||||| ||| | ||||| ||||||| Sbjct 1149415 GGACTACTTGTTCAATGCAATTGAAACTCTACCTTGTGTTACCAAGAAAGCTAACTGGGC 1149356 Query 44092 CCTTAAATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | || ||||| | || | || | | |||| || ||| || | || ||||||| Sbjct 1149355 TATGAACTGGATCAGTCATAAGAGTGCTACATTTGCTGAGCGAGTTATAGCTTTTGCAGC 1149296 Query 44149 TGTGGAAGGCATTTTCTTTTCAG-GATCG-TTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 ||| ||||| |||||| ||||| | | | ||||| |||||||||||||| ||||| ||| Sbjct 1149295 TGTTGAAGGAATTTTC--TTCAGTGGTAGTTTTGCTGCCATATTTTGGTTGAAGAAGCGA 1149238 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGA 44256 ||||| ||||| || | || ||||| ||||| |||| ||| ||||| Sbjct 1149237 GGTTTAATGCCAGGACTTAC--TTTCAGCAATGAACTAATTTCTCGCGATGA 1149188 >seq211 Length=1509898 Score = 109 bits (120), Expect = 4e-19 Identities = 185/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 40949 AGGAATGGATCAATTACAGTGCGTTATAGATACGATT--AAATCCGATCCCGATAGCCGA 41006 ||| || ||||||||| | || || ||||| ||| |||| | || ||| || Sbjct 53031 AGGCATTGATCAATTAAAACAAGTAATTGATACAATTCTAAATA--AACCAGATGATAGA 53088 Query 41007 CGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGT 41066 | || || ||| || ||||| |||| ||| | | | ||||| | ||||||||| Sbjct 53089 AGAATCATTATGTCAGCTTGGAATCCAATTGACATTCCAATAATGGCTCTCCCACCTTGT 53148 Query 41067 CATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGA 41126 ||| || ||||||||||||| ||||| ||||| || |||||| | ||||||||| Sbjct 53149 CATGCATTGGTTCAGTTTTACGTTGCTAATGGAGAACTTTCTTGTCAACTTTATCAAAGA 53208 Query 41127 TCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTAT 41186 | |||||||||||| || || || ||||| ||||| ||| | | | || ||| Sbjct 53209 AGTGCTGACATGGGACTTGGTGTACCATTTAATATAGCTTCATATTCCTTATTGACATAT 53268 Query 41187 ATGATTGCACACGTTACCAATTTAAA 41212 ||||| || || |||| || ||||| Sbjct 53269 ATGATAGCTCATATTACAAAATTAAA 53294 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 ||||||| | |||| || || || |||| ||||| || ||| | | ||||| Sbjct 51248 ATCCCGACGACAGACGCATCATCATGAGCGCCTGGAATCCGGTCGACATCCCGAAGATGG 51307 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 | |||| || || || | | | ||||||||||| ||||| || || || || |||| Sbjct 51308 CCCTGCCGCCCTGCCACTCGCTGGCCCAGTTTTACGTCTGCAACGGCGAGCTCTCCTGTC 51367 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATG 41172 | ||||| || || | || |||||||| || ||||| || || ||||| || || Sbjct 51368 ACTTGTACCAGAGGGCCGGCGACATGGGTCTGGGGGTGCCCTTCAACATTGCCTCCTACT 51427 Query 41173 CTCTGCTCACGTATATGATTGCACACGTTACCAA 41206 | |||||||| | ||||| || ||||| |||| Sbjct 51428 CGCTGCTCACCTGCATGATAGCGCACGTGGCCAA 51461 >seq303 Length=5426051 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------CT 19602 ||||| ||||| || | || ||| | || || || || || |||||| || Sbjct 4376507 TTGCATATTATCATCTTTGACGAAATCGATGCCATTTGCAAAGCCAGAGGTAGCGTGGCT 4376448 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCT-GTCAAAATTAGACGGTGT 19661 |||| || || || || || ||||| |||||||| | || | ||||||| || || || Sbjct 4376447 GGTGCAACGGGTGTTCACGATACTGTAGTCAATCAGTTGCTAGCCAAAATT-GATGGCGT 4376389 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | | || ||||||||||| | || ||||| ||||| || |||| || | || ||| Sbjct 4376388 TGAACAGTTGAATAATATTCTCGTCATTGGTATGACCAACAGACGTGACATGATTGACGA 4376329 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGAT 19757 || ||| | ||||| ||||| ||||| ||| ||| Sbjct 4376328 GGCTTTACTCCGACCTGGTCGATTGGAGGTAAGGAT 4376293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454270693785