Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq89 165 7e-36 seq56 98.7 8e-16 seq123 84.2 2e-11 >seq89 Length=3244750 Score = 165 bits (182), Expect = 7e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | | |||||||| ||||| | || || || ||||||||||||||||| Sbjct 1691436 TGCCTCCTCTAAGACGCAATACTAAATGCAGTGTCGACTCCTTTTGAATATTGTAGTCTG 1691495 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| ||||||| |||||||| |||||| ||||||||||||||||||| || | Sbjct 1691496 ACAAAGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGCTGTTGATCTGGGG 1691555 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || || ||| |||| | |||| | ||||| | |||||| | Sbjct 1691556 GAATTCCTTCTTTGTCTTGAATTTTGGCCTTCACGTTTTCAATTGTGTCGGAGGCTTCGA 1691615 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 | || || || || | ||| || ||||||||||| ||||| ||||||||| || || Sbjct 1691616 CCTCAAGTGTGATGGTTTTACCTGTCAGAGTTTTGACAAAAATTTGCATACCTCCT 1691671 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || ||||| ||||| || || || ||||| |||||||||||||| Sbjct 1690754 CCACCTCGCAGACGTAATACTAAATGCAAAGTTGACTCTTTCTGAATATTGTAGTCAGAT 1690813 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || || ||||| || || | |||||||||||||| || || || Sbjct 1690814 AGAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGG 1690873 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| ||||| ||| | |||| | |||||| | |||||||| Sbjct 1690874 ATTCCCTCTTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCAACC 1690933 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||||| |||||||| || ||||| || ||||| Sbjct 1690934 TCCAATGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 1690980 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||| || | || || |||||||||||||| ||||| | Sbjct 1691210 CCACCACGCAGACGGAGTACCAAGTGGAGGGTGGACTCTTTTTGAATATTATAGTCCGAC 1691269 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||| ||||| || |||| | |||||| ||||| || || Sbjct 1691270 AATGTGCGACCATCTTCCAACTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGTGGG 1691329 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||||| || | |||| | ||||||| ||| || ||| Sbjct 1691330 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCTGAGGCCTCGACT 1691389 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| || |||| ||||| |||||||||||||| Sbjct 1691390 TCCAAAGTAATGGTTTTACCAGTCAATGTTTTAACAAAGATTTGCAT 1691436 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| ||||| || | || || || || || || |||||||| | Sbjct 1689820 CCACCACGCAGACGCAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAC 1689879 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| ||||||||||| || | || |||||||| ||||| || || Sbjct 1689880 AGTGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGA 1689939 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| || | |||| | |||||| | ||||| ||| Sbjct 1689940 ATGCCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATAGTGTCGGAAGCTTCCACT 1689999 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || || | || || |||| || || |||||||| |||||| || Sbjct 1690000 TCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACAAAGATCTGCATACCT 1690050 >seq56 Length=4197193 Score = 98.7 bits (108), Expect = 8e-16 Identities = 191/281 (68%), Gaps = 11/281 (4%) Strand=Plus/Minus Query 131712 CTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCA 131771 || |||| || ||||||| | || | ||| || ||||||||||||||||| ||||| | Sbjct 1120527 CTTTACCTGTATTTTTTTTGAGATCAAGAAATTCAAAAATGTCCGCATGCCAAGGTTCAA 1120468 Query 131772 AATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGT 131828 ||||| ||| | || ||| | | ||||| ||||| | ||||| || | ||| Sbjct 1120467 GATACATTGCAAAAGCTCCTGGCCTCTTATTACCTCCTTGGTCAACATAGCGTGCTGTGT 1120408 Query 131829 TGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGT----GCTCTTA 131884 | || || || | ||||| || | ||||| || | |||||| || || || Sbjct 1120407 TATTATACACTCTTAACATAGGAACTAAACCATTAGAAACTCCATTTGTTCCGGCAATTC 1120348 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTA 131944 |||| || |||||||||||| |||| || | | ||||| ||||| | ||||| Sbjct 1120347 TTGTA----CCCTTGGCTCTGATTGTGTGGACACTCAAACCAATGCCTCCAGCAGATTTA 1120292 Query 131945 GAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTC 131985 | ||| || ||| | ||| |||| ||| |||||||| Sbjct 1120291 CTTACTAGAGCACATCTCTTTAATGTGTCATAAATACCTTC 1120251 Score = 98.7 bits (108), Expect = 8e-16 Identities = 132/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 131309 ACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGC 131366 ||||| ||| ||| ||||| |||| ||||||||||||| ||| ||| | || Sbjct 1121073 ACAAACATATTAACAGCAATTGATGCCAAATTACAAACTGCCACTTCATCAGGTGATG-- 1121016 Query 131367 AATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGAT 131426 | ||||| |||| || | || |||||||| || | || ||||||||||||||||||| Sbjct 1121015 AGTACTGTACAACCTCAGTACATAAATTACTACTTCTGATTGTGCCCAAATTTTGTTGAT 1120956 Query 131427 TGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTG 131484 || |||| ||| ||| | || ||||| | |||||| || || || ||||| ||||| Sbjct 1120955 TGGATTTACGATT-ACAAGCATCTTTGTATAACATGTATGGTGTTCCAGTTTCTACTTG 1120898 >seq123 Length=3260300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 ||||||| ||||| || || | |||| | ||||| | |||||||| ||| | | Sbjct 712125 CTTTTTGTATATTATAATCTTGAAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGA 712184 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | | | ||| ||||| || || | |||||||| || ||| || ||| | ||| Sbjct 712185 TCAACCTCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTAGCTTTGACATTTT 712244 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||| || | ||||||||||| | ||| || | ||||| || | |||||| |||| Sbjct 712245 CAATAGTATCAGAAGCTTCAACTTCCAAAGTAATGGTCTTGCCAGTTAAAGTTTTGACAA 712304 Query 27238 AGATTTGCATAGCTGCTAAAA 27258 |||| ||||| |||||||| Sbjct 712305 AGATCTGCAT-TTTGCTAAAA 712324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932551136984