Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq89 136 3e-27 seq256 89.7 4e-13 seq336 87.8 1e-12 >seq89 Length=3244750 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || || ||||| ||| ||| || |||| |||||| ||| Sbjct 1691209 AATGCAAATTTTTGTCAAGACCCTCACTGGAAAAACTATAACTCTTGAAGTCGAA-GCAT 1691151 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || || | ||| || ||| ||||| ||||||||||| | || || Sbjct 1691150 CTGACACAATTGAAAAT--GTGAAAGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGA 1691093 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| || ||||||||||| || ||||||||||| || | |||| ||||| ||||| Sbjct 1691092 CCAGCAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACATTGTCAGATTA 1691033 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||||| ||| | || |||||| ||||| | ||||| ||| Sbjct 1691032 TAACATCCAAAAAGAGTCAACTCTTCACTTGGTTCTGCGTCTTCGTGGTGGC 1690981 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||| || || ||| || ||| |||| |||||| | || Sbjct 1691664 ATGCAAATTTTTGTCAAAACTCTGACAGGTAAAACCATCACACTTGAGGTCGAAGCCTCC 1691605 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || || || ||||| ||||||||||| |||| || || Sbjct 1691604 GACACAATTGAAAACGTGAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGATCAA 1691545 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || | ||||| ||||||||||| | || |||| |||| ||||| || ||||| Sbjct 1691544 CAGCGTCTCATTTTCGCCGGAAAACAGCTTGAAGACGGTCGCACTTTGTCAGACTACAAT 1691485 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || ||||| ||| || ||||||| || |||||| Sbjct 1691484 ATTCAAAAGGAGTCGACACTGCATTTAGTATTGCGT 1691449 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| ||| ||||| | || ||||| | | Sbjct 1691436 ATGCAAATCTTTGTTAAAACATTGACTGGTAAAACCATTACTTTGGAAGTCGAGGCCTCA 1691377 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || ||||||||||| | || || | Sbjct 1691376 GACACAATTGAAAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATC 1691319 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || ||||||||||| || || || ||||| || | |||| ||||| || || | Sbjct 1691318 AGCAGCGTTTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACATTGTCGGACTATA 1691259 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||||||| ||| | || ||||| | ||| ||||||| || Sbjct 1691258 ATATTCAAAAAGAGTCCACCCTCCACTTGGTACTCCGTCTGCGTGGTGG 1691210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || ||||| || ||||| |||| Sbjct 1689953 GACAAAGAAGGCATTCCTCCAGATCAGCAGCGTCTTATCTTTGCTGGTAAACAGCTGGAA 1689894 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| |||| || ||||||||||| || ||| ||| | || |||||| || Sbjct 1689893 GATGGACGCACACTGTCTGACTACAACATCCAGAAGGAGTCGACTCTTCACTTGGTTCTG 1689834 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 1689833 CGTCTGCGTGGTGG 1689820 >seq256 Length=3517054 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||||||||| || || || ||| || || |||| || || Sbjct 131014 AAAATGCAAATCTTTGTGAAAACACTCACAGGAAAAACCATCACCCTTGAGGTTGATGCG 130955 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| ||||| ||||| || || ||||| |||| | Sbjct 130954 GCTGACAGCATTGAAAAT--GTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAG 130897 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| | || || || ||||||||||||||||| || | ||| | |||||||||| Sbjct 130896 ACCAGCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGTACATTGTCCGATT 130837 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || || || | ||||| || | ||| ||||||| || Sbjct 130836 ACAATATTCAGAAGGAATCTACCCTTCATTTAGTCCTTCGTCTGCGTGGTGG 130785 >seq336 Length=3726090 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||| |||||| | ||||| ||| |||||| | || |||||| | Sbjct 1528572 AAAATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATTACCTTGGAGGTCGAAGCC 1528513 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || | ||| ||||| ||||| || || ||||| |||| || Sbjct 1528512 TCTGATACTATTGAAAAT--GTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCGG 1528455 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC--GA 27962 | |||||| | || || ||||| ||||||||||| || || | || | | ||| || Sbjct 1528454 ATCAGCAAAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTA--CTCTCCAAGA 1528397 Query 27963 TTACAACATCCAAAAAG 27979 ||||||||||||||||| Sbjct 1528396 TTACAACATCCAAAAAG 1528380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860851664939