Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichogramma_20pretiosum_20[refseq_20GCF_5F000599845.1_202014-03-24] 357 sequences; 195,087,592 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq89 156 1e-32 seq256 147 5e-30 seq222 122 2e-22 seq1 100 7e-16 >seq89 Length=3244750 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| ||||| ||||| ||||| || ||||| ||| ||| ||| Sbjct 1691661 CAAATTTTTGTCAAAACTCTGACAGGTAAAACCATCACACTTGAGGTCGAAGCCTCCGAC 1691602 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || ||||| |||||||||||||| || || || || || Sbjct 1691601 ACAATTGAAAACGTGAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGATCAACAG 1691542 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||||||||| ||||| || | ||| | | || || || | Sbjct 1691541 CGTCTCATTTTCGCCGGAAAACAGCTTGAAGACGGTCGCACTTTGTCAGACTACAATATT 1691482 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || ||||||||| | || ||| | || ||| Sbjct 1691481 CAAAAGGAGTCGACACTGCATTTAGTATTGCGTCTTAGA 1691443 Score = 149 bits (164), Expect = 2e-30 Identities = 180/242 (74%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 177902 ATAAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCAC 177961 |||| | || | ||||||| | || || ||||| || || || || ||||| ||||| Sbjct 1692136 ATAATTTCAGATAAAAATGC---AGATCTTTGTGAAGACGCTGACTGGTAAAACCATCAC 1692080 Query 177962 CCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGA 178021 | ||||| || || |||||||| || || || || ||||||||| |||||||| Sbjct 1692079 ATTGGAGGTCGAGGCATCCGACACCATTGAAAATGTTAAGGCAAAGATTCAAGACAAAGA 1692020 Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 || ||||| || |||||||| || | ||||| || ||||| ||||||||||||||| | Sbjct 1692019 GGGCATCCCCCCAGACCAGCAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGATGGACG 1691960 Query 178082 GACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCA 178140 || |||| | ||||||||| | || || ||||| ||||| || ||||| | ||| | | Sbjct 1691959 CAC-CTTGTCTGATTATAACATTCAGAAGGAATCCACACTCCACCTTGTACTCAGATTGA 1691901 Query 178141 GA 178142 || Sbjct 1691900 GA 1691899 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| |||||||| || || || || || ||| || ||| Sbjct 1691205 CAAATTTTTGTCAAGACCCTCACTGGAAAAACTATAACTCTTGAAGTCGAAGCATCTGAC 1691146 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||||||||||||||| |||||||| |||||||| Sbjct 1691145 ACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAGCAG 1691086 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| | || | | ||||||||| || Sbjct 1691085 CGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACATTGTCAGATTATAACATC 1691026 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||| ||||| || || |||| || Sbjct 1691025 CAAAAAGAGTCAACTCTTCA-CTTGGTT 1690999 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || || ||||| ||||| || ||||| Sbjct 1691889 CAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCTTCAGAT 1691830 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || ||||| || || || ||||| || || || ||||| Sbjct 1691829 ACTATTGAGAATGTTAAGGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCAGCAG 1691770 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | ||||||||| | ||||| | ||||| ||| | Sbjct 1691769 AGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGCACTCTGTCAGATTACAACATT 1691710 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| |||||||||||||| | ||| | ||| Sbjct 1691709 CAGAAAGAATCCACACTGCATCTTGTACTCAGATTGAGA 1691671 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | |||||||| || |||||| | || |||||| || ||| Sbjct 1690043 CAGATCTTTGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAAGCTTCCGAC 1689984 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||| ||||||||||| || ||||| || ||||| Sbjct 1689983 ACTATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAGCAG 1689924 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||||| ||||||||| | || || | || || ||| || Sbjct 1689923 CGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGACGCACACTGTCTGACTACAACATC 1689864 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 1689863 CAGAAGGAGTCGACTCTTCA-CTTGGTT 1689837 Score = 100 bits (110), Expect = 7e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || ||||| || || | || || || ||||||| Sbjct 1691433 CAAATCTTTGTTAAAACATTGACTGGTAAAACCATTACTTTGGAAGTCGAGGCCTCAGAC 1691374 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||||||||||||||| || || ||||| Sbjct 1691373 ACAATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAGCAG 1691314 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || ||| | |||||||| | || | | || ||||| | Sbjct 1691313 CGTTTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACATTGTCGGACTATAATATT 1691254 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 1691253 CAAAAAGAGTCCACCCTCCA-CTTG 1691230 >seq256 Length=3517054 Score = 147 bits (162), Expect = 5e-30 Identities = 159/210 (76%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || |||||||| |||||||||||||| |||||||| ||||| || Sbjct 131014 AAAATGC---AAATCTTTGTGAAAACACTCACAGGAAAAACCATCACCCTTGAGGTTGAT 130958 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 | |||| ||| || || ||||| || || || || || |||||||| ||||| Sbjct 130957 GCGGCTGACAGCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCA 130898 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||| || | ||||||||||||||||| | ||||||||| | || | ||||| Sbjct 130897 GACCAGCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGTACATTGTCCGAT 130838 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || | || || ||||| || || ||| Sbjct 130837 TACAATATTCAGAAGGAATCTACCCTTCAT 130808 >seq222 Length=7060343 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || || || || |||||| | ||||| || ||| ||| Sbjct 1554045 CAGATTTTTGTTAAAACTTTGACTGGTAAGACCATCACCTTGGAGGTTGAGGCCTCTGAC 1553986 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || ||||| ||||||||||||||||| || |||||| Sbjct 1553985 ACTATTGAAAATGTCAAGGCTAAAATCCAGGATAAAGAAGGAATCCCTCCAGATCAGCAA 1553926 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| | |||||||| | || ||| ||||| || || Sbjct 1553925 AGATTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTTCAAGATTACAATATC 1553866 Query 178104 CAAAAAG 178110 || |||| Sbjct 1553865 CAGAAAG 1553859 >seq1 Length=8792355 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| ||||| || |||||| || | ||||| || |||||||| |||||||||||| | Sbjct 1064576 AGGAATTCCTCCAGATCAGCAAAGATTAATCTTTGCTGGAAAACAACTCGAAGATGGACG 1064635 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| | || |||||| | || ||||||||||| || || ||||| Sbjct 1064636 CACACTTTCAGACTATAACATTCAGAAAGAATCAACCCTTCACCTTGT 1064683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725694058258