Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_000902.1
Length=60942
Score E
Sequences producing significant alignments: (Bits) Value
seq9614 430 5e-116
seq19165 390 4e-104
>seq9614
Length=652
Score = 430 bits (476), Expect = 5e-116
Identities = 300/340 (88%), Gaps = 1/340 (0%)
Strand=Plus/Minus
Query 19391 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCGAACC 19450
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593
Query 19451 ATAACCGCCATCGCTGGACTGTCGAAGAATGCAGGGCGATCAAGGCGAAGTATCAGCAGA 19510
|||||||||||||||||||| ||||||| |||| |||||||||||| |||| || ||||
Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533
Query 19511 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACAGTAAAAACCAT 19570
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473
Query 19571 TCCAGACATGCTCGTTGAGGCATATGAAAATCAGACCGAGGTAGCCAGAATACTGAACTG 19630
|||||||||||||||||| |||| | ||||||||| || ||||| | | |||||| ||
Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413
Query 19631 TAGTCGCAACACGGTCAGAAAATACACTGGCGATAAAGAAGGGAAAAGACACGCTATCGT 19690
||||||| ||||||||||||||| || |||||||| ||||||| ||||| |||||
Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353
Query 19691 CAACGGTGTTCTTATGGTTCACCGCGGATGGGGT-AAAGA 19729
||||| ||||| |||||||| ||||||||| || |||||
Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313
>seq19165
Length=1007
Score = 390 bits (432), Expect = 4e-104
Identities = 233/244 (95%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 4827 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4886
|||| | ||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193
Query 4887 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4946
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133
Query 4947 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5006
| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 73
Query 5007 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5066
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 72 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 13
Query 5067 TGAT 5070
||||
Sbjct 12 TGAT 9
Score = 176 bits (194), Expect = 2e-39
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 4519 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4578
||||| |||||||||||||||||| ||||| || || |||||||| ||||||||||||||
Sbjct 428 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 369
Query 4579 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4635
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 368 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312
Score = 167 bits (184), Expect = 9e-37
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 58885 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 58944
||||| | | |||||||| | ||| ||||| || || |||||||| ||||||||||||||
Sbjct 428 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 369
Query 58945 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 59001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312
Score = 136 bits (150), Expect = 2e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 59508 TCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAAGC 59567
||||||| |||||||||||| |||||||||| | ||||| ||||||||| || ||||
Sbjct 207 TCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGT 148
Query 59568 TCTGCATCCACGAACAGCCAGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAACA 59627
| || || |||| ||||||||| || ||||||||||||||||||||||| |||||
Sbjct 147 CCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACA 88
Query 59628 ATGAGTAGCAGAT 59640
|||||| ||||||
Sbjct 87 ATGAGTGGCAGAT 75
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194706758500128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |