Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq9614 430 5e-116 seq19165 390 4e-104 >seq9614 Length=652 Score = 430 bits (476), Expect = 5e-116 Identities = 300/340 (88%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 19900 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCGAACC 19959 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 19960 ATAACCGCCATCGCTGGACTGTCGAAGAATGCAGGGCGATCAAGGCGAAGTATCAGCAGA 20019 |||||||||||||||||||| ||||||| |||| |||||||||||| |||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 20020 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACAGTAAAAACCAT 20079 |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 20080 TCCAGACATGCTCGTTGAGGCATATGAAAATCAGACCGAGGTAGCCAGAATACTGAACTG 20139 |||||||||||||||||| |||| | ||||||||| || ||||| | | |||||| || Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 20140 TAGTCGCAACACGGTCAGAAAATACACTGGCGATAAAGAAGGGAAAAGACACGCTATCGT 20199 ||||||| ||||||||||||||| || |||||||| ||||||| ||||| ||||| Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 20200 CAACGGTGTTCTTATGGTTCACCGCGGATGGGGT-AAAGA 20238 ||||| ||||| |||||||| ||||||||| || ||||| Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313 >seq19165 Length=1007 Score = 390 bits (432), Expect = 4e-104 Identities = 233/244 (95%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 4828 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4887 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193 Query 4888 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4947 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133 Query 4948 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5007 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 73 Query 5008 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5067 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 72 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 13 Query 5068 TGAT 5071 |||| Sbjct 12 TGAT 9 Score = 268 bits (296), Expect = 4e-67 Identities = 166/178 (93%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 60152 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 60211 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193 Query 60212 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 60271 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133 Query 60272 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTAGCAGAT 60329 | ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGAT 75 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4520 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4579 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 428 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 369 Query 4580 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4636 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 368 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312 Score = 152 bits (168), Expect = 2e-32 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 59844 TGCTGCTCCCAGCTCCACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 59903 ||||| | | ||||| || | ||| ||||| || || |||||||| |||||||||||||| Sbjct 428 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 369 Query 59904 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 59960 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 368 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197034134701824