Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 107 2e-18
seq50848 105 7e-18
seq13914 93.3 4e-14
>seq7792
Length=27931
Score = 107 bits (118), Expect = 2e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296
|| || || || | || ||||||||||| || || | ||||| |||| |||||||||
Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554
Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356
||||| ||| ||| ||||| | ||||||||||| |||| || || ||| ||||
Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614
Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTT 17416
|| |||||||| ||||| ||||||||||| || | | ||| |||||| | ||
Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674
Query 17417 TCGTCCGGT 17425
|| || |||
Sbjct 19675 TCTTCGGGT 19683
>seq50848
Length=23004
Score = 105 bits (116), Expect = 7e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACA 119919
|| || || || |||||||| | ||||| | ||| ||||||||||||||| || || |
Sbjct 10575 CCAACATAGCCATTGGGATCTCTACCATCCATACT-GTATTTATCGTTTAAATATATCGA 10517
Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979
|| |||||| || ||| | | ||||||| | |||||| || ||||| |||||
Sbjct 10516 GATCTCTAACGCTTCCTCTGGACTTTTCGTCCATTCTAATATTTTCTTCGCCCAATACAT 10457
Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039
| || |||| |||||||| ||||| ||||||||| ||| || || ||||||||
Sbjct 10456 TCTCAAAAATCCGTGCATTTTGCCTTCTACAACCATTTGTTTTTGAGCCGCATTCCATAA 10397
Query 120040 GGGATCGTGTGT 120051
|| ||||| ||
Sbjct 10396 AGGGTCGTGAGT 10385
>seq13914
Length=11729
Score = 93.3 bits (102), Expect = 4e-14
Identities = 155/222 (70%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 16988 TCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||||||| ||||| | ||| || || |||| || ||||| || | ||| |
Sbjct 7888 TCGTCTCT--TGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | |||||||||||| || || ||||||||||| ||||| ||||| | ||||| |
Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005
Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165
| || | || ||| | | ||||||| ||||| | ||||| ||| | |||| || |
Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065
Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207
||||| ||| | || ||| ||||| ||||| || ||||
Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATA 8107
Score = 89.7 bits (98), Expect = 5e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313
|||||||||||| || |||| ||||| || | || |||||||||||||| ||| |||
Sbjct 8225 GCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTGAAATCCGTAAAAAAATCTGGC 8284
Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373
||| | ||||| ||||| | | || || || ||| |||||| || ||||| || ||
Sbjct 8285 TTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAAATTTTCATTAACGATACCATC 8344
Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGT 17425
|| |||||||| || || | || |||||| | || || || |||
Sbjct 8345 AGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTTCTTCTCTTCGGGT 8396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517025557242480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |