Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7792 107 2e-18 seq50848 105 7e-18 seq13914 93.3 4e-14 >seq7792 Length=27931 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || || || || | || ||||||||||| || || | ||||| |||| ||||||||| Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 ||||| ||| ||| ||||| | ||||||||||| |||| || || ||| |||| Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTT 17416 || |||||||| ||||| ||||||||||| || | | ||| |||||| | || Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674 Query 17417 TCGTCCGGT 17425 || || ||| Sbjct 19675 TCTTCGGGT 19683 >seq50848 Length=23004 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACA 119919 || || || || |||||||| | ||||| | ||| ||||||||||||||| || || | Sbjct 10575 CCAACATAGCCATTGGGATCTCTACCATCCATACT-GTATTTATCGTTTAAATATATCGA 10517 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 || |||||| || ||| | | ||||||| | |||||| || ||||| ||||| Sbjct 10516 GATCTCTAACGCTTCCTCTGGACTTTTCGTCCATTCTAATATTTTCTTCGCCCAATACAT 10457 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 | || |||| |||||||| ||||| ||||||||| ||| || || |||||||| Sbjct 10456 TCTCAAAAATCCGTGCATTTTGCCTTCTACAACCATTTGTTTTTGAGCCGCATTCCATAA 10397 Query 120040 GGGATCGTGTGT 120051 || ||||| || Sbjct 10396 AGGGTCGTGAGT 10385 >seq13914 Length=11729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 16988 TCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||| ||||| | ||| || || |||| || ||||| || | ||| | Sbjct 7888 TCGTCTCT--TGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | |||||||||||| || || ||||||||||| ||||| ||||| | ||||| | Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 | || | || ||| | | ||||||| ||||| | ||||| ||| | |||| || | Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 ||||| ||| | || ||| ||||| ||||| || |||| Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATA 8107 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||||||||||| || |||| ||||| || | || |||||||||||||| ||| ||| Sbjct 8225 GCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTGAAATCCGTAAAAAAATCTGGC 8284 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 ||| | ||||| ||||| | | || || || ||| |||||| || ||||| || || Sbjct 8285 TTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAAATTTTCATTAACGATACCATC 8344 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGT 17425 || |||||||| || || | || |||||| | || || || ||| Sbjct 8345 AGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTTCTTCTCTTCGGGT 8396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517025557242480