Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 122 9e-23
seq13914 105 7e-18
seq50848 91.5 2e-13
>seq7792
Length=27931
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534
|| || || |||| |||||||||||||||||| || | |||||||||| |||||||||
Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554
Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594
|| |||||| ||| ||| || | ||||| ||||| | || || || | | ||
Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614
Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654
|||||||||||||||||| ||| || ||||| || | | |||| |||||| | ||
Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674
Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689
|| || | | | || | | ||| ||| | |||||
Sbjct 19675 TCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709
>seq13914
Length=11729
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
|| || || ||||||| || |||||||||||||| |||| ||||| || | || |||
Sbjct 8205 ATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTGA 8264
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591
||||| || || ||| || || | ||||||||||| | |||| || || | |
Sbjct 8265 AATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAAA 8324
Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651
|| ||||| |||||||| ||| ||||| ||||| || || | ||| |||||| |
Sbjct 8325 TTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTTC 8384
Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689
|| || || | | | || | | ||||||| | |||||
Sbjct 8385 TTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422
Score = 89.7 bits (98), Expect = 5e-13
Identities = 154/222 (69%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTT 16281
|||||||||| ||||| | ||| ||| ||||| | || |||||| || | |||
Sbjct 7886 CTTCGTCTCT--TGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTT 7943
Query 16282 CTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAA 16341
|| | ||| |||||||||||||| || |||||||| ||||| || |||| |||||
Sbjct 7944 TTTAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAA 8003
Query 16342 AGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTC 16401
||| || | || ||| | | || || | ||| | | ||||| ||| |||| ||
Sbjct 8004 AGCTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTC 8063
Query 16402 GGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443
|||||| || | ||| ||| ||||| ||||| || ||
Sbjct 8064 AGCTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAA 8105
>seq50848
Length=23004
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTTATCGTTTAAGTAGATACA 119072
|| || || || ||||||||| | || || | ||| ||| ||||||||||| || || |
Sbjct 10575 CCAACATAGCCATTGGGATCTCTACCATCCATACT-GTATTTATCGTTTAAATATATCGA 10517
Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132
|| |||||| || ||| | || ||||||| | |||||| || ||||| |||||
Sbjct 10516 GATCTCTAACGCTTCCTCTGGACTTTTCGTCCATTCTAATATTTTCTTCGCCCAATACAT 10457
Query 119133 ACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAG 119192
| ||| | ||||||||||| || || || ||| || ||| || | |||||||
Sbjct 10456 TCTCAAAAATCCGTGCATTTTGCCTTCTACAACCATTTGTTTTTGAGCCGCATTCCATAA 10397
Query 119193 AGGATCGTGTGT 119204
||| ||||| ||
Sbjct 10396 AGGGTCGTGAGT 10385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510900518025520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |