Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7792 122 9e-23 seq13914 105 7e-18 seq50848 91.5 2e-13 >seq7792 Length=27931 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 || || || |||| |||||||||||||||||| || | |||||||||| ||||||||| Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594 || |||||| ||| ||| || | ||||| ||||| | || || || | | || Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 |||||||||||||||||| ||| || ||||| || | | |||| |||||| | || Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 || || | | | || | | ||| ||| | ||||| Sbjct 19675 TCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709 >seq13914 Length=11729 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||||| || |||||||||||||| |||| ||||| || | || ||| Sbjct 8205 ATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTGA 8264 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 ||||| || || ||| || || | ||||||||||| | |||| || || | | Sbjct 8265 AATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAAA 8324 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 || ||||| |||||||| ||| ||||| ||||| || || | ||| |||||| | Sbjct 8325 TTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTTC 8384 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 || || || | | | || | | ||||||| | ||||| Sbjct 8385 TTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTT 16281 |||||||||| ||||| | ||| ||| ||||| | || |||||| || | ||| Sbjct 7886 CTTCGTCTCT--TGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTT 7943 Query 16282 CTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAA 16341 || | ||| |||||||||||||| || |||||||| ||||| || |||| ||||| Sbjct 7944 TTTAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAA 8003 Query 16342 AGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTC 16401 ||| || | || ||| | | || || | ||| | | ||||| ||| |||| || Sbjct 8004 AGCTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTC 8063 Query 16402 GGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 |||||| || | ||| ||| ||||| ||||| || || Sbjct 8064 AGCTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAA 8105 >seq50848 Length=23004 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTTATCGTTTAAGTAGATACA 119072 || || || || ||||||||| | || || | ||| ||| ||||||||||| || || | Sbjct 10575 CCAACATAGCCATTGGGATCTCTACCATCCATACT-GTATTTATCGTTTAAATATATCGA 10517 Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132 || |||||| || ||| | || ||||||| | |||||| || ||||| ||||| Sbjct 10516 GATCTCTAACGCTTCCTCTGGACTTTTCGTCCATTCTAATATTTTCTTCGCCCAATACAT 10457 Query 119133 ACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAG 119192 | ||| | ||||||||||| || || || ||| || ||| || | ||||||| Sbjct 10456 TCTCAAAAATCCGTGCATTTTGCCTTCTACAACCATTTGTTTTTGAGCCGCATTCCATAA 10397 Query 119193 AGGATCGTGTGT 119204 ||| ||||| || Sbjct 10396 AGGGTCGTGAGT 10385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510900518025520