Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_001416.1
Length=48502
Score E
Sequences producing significant alignments: (Bits) Value
seq19165 1802 0.0
seq9614 1164 0.0
seq69273 560 3e-155
seq67353 343 5e-90
>seq19165
Length=1007
Score = 1802 bits (1998), Expect = 0.0
Identities = 999/999 (100%), Gaps = 0/999 (0%)
Strand=Plus/Minus
Query 29592 CGGATCTGCACAACATTGATAACGCCCAATCTTTTTGCTCAGACTCTAACTCATTGATAC 29651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGGATCTGCACAACATTGATAACGCCCAATCTTTTTGCTCAGACTCTAACTCATTGATAC 948
Query 29652 TCATTTATAAACTCCTTGCAATGTATGTCGTTTCAGCTAAACGGTATCAGCAATGTTTAT 29711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TCATTTATAAACTCCTTGCAATGTATGTCGTTTCAGCTAAACGGTATCAGCAATGTTTAT 888
Query 29712 GTAAAGAAACAGTAAGATAATACTCAACCCGATGTTTGAGTACGGTCATCATCTGACACT 29771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTAAAGAAACAGTAAGATAATACTCAACCCGATGTTTGAGTACGGTCATCATCTGACACT 828
Query 29772 ACAGACTCTGGCATCGCTGTGAAGACGACGCGAAATTCAGCATTTTCACAAGCGTTATCT 29831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACAGACTCTGGCATCGCTGTGAAGACGACGCGAAATTCAGCATTTTCACAAGCGTTATCT 768
Query 29832 TTTACAAAACCGATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAG 29891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TTTACAAAACCGATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAG 708
Query 29892 ATACTCACCTGCATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGAT 29951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ATACTCACCTGCATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGAT 648
Query 29952 GTCGATAGTTACTAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACC 30011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GTCGATAGTTACTAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACC 588
Query 30012 AGTGCAGTGCTTGATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCC 30071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AGTGCAGTGCTTGATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCC 528
Query 30072 GTCTTCACGGACTTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAAC 30131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GTCTTCACGGACTTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAAC 468
Query 30132 ACCTTCGTAATACTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACG 30191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ACCTTCGTAATACTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACG 408
Query 30192 CAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTG 30251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTG 348
Query 30252 CTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATG 30311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATG 288
Query 30312 GAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAG 30371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAG 228
Query 30372 TGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCC 30431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCC 168
Query 30432 TCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATC 30491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATC 108
Query 30492 GGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATT 30551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 GGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATT 48
Query 30552 TTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGAT 30590
|||||||||||||||||||||||||||||||||||||||
Sbjct 47 TTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGAT 9
>seq9614
Length=652
Score = 1164 bits (1290), Expect = 0.0
Identities = 647/648 (99%), Gaps = 0/648 (0%)
Strand=Plus/Minus
Query 42883 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 42942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593
Query 42943 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 43002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533
Query 43003 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 43062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473
Query 43063 TCCAGACATGCTCGTTGAAGCATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 43122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413
Query 43123 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 43182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353
Query 43183 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGAGATGCGCTATTACGAAAAAA 43242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGAGATGCGCTATTACGAAAAAA 293
Query 43243 TTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGA 43302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGA 233
Query 43303 ACCTGATGAACAAACTGGATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGG 43362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACCTGATGAACAAACTGGATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGG 173
Query 43363 TGGGCGATTTGGTTGATCGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCC 43422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TGGGCGATTTGGTTGATCGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCC 113
Query 43423 CCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGC 43482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGC 53
Query 43483 GTGGAAACGTTAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 43530
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GTGGAAACGTTAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 5
>seq69273
Length=3889
Score = 560 bits (620), Expect = 3e-155
Identities = 310/310 (100%), Gaps = 0/310 (0%)
Strand=Plus/Minus
Query 2241 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 2300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 720
Query 2301 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 2360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 660
Query 2361 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 600
Query 2421 GATGGCAGGaaaaaaaTACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 2480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 540
Query 2481 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGT 2540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGT 480
Query 2541 GCGCTGCTGG 2550
||||||||||
Sbjct 479 GCGCTGCTGG 470
Score = 482 bits (534), Expect = 7e-132
Identities = 269/270 (99%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 12664 TTGGCGGGGCTGTTGGTGGCGGCGCATCCGCGTCAGGCGGTACAGCCATTCAGGCCGCTG 12723
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3889 TTAGCGGGGCTGTTGGTGGCGGCGCATCCGCGTCAGGCGGTACAGCCATTCAGGCCGCTG 3830
Query 12724 CGGCGAAATTCCATTTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAG 12783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3829 CGGCGAAATTCCATTTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAG 3770
Query 12784 CGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCG 12843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3769 CGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCG 3710
Query 12844 TGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGGTACACCGG 12903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3709 TGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGGTACACCGG 3650
Query 12904 GCAGCATGGCAGACAGCCGGTCGCAGGCGT 12933
||||||||||||||||||||||||||||||
Sbjct 3649 GCAGCATGGCAGACAGCCGGTCGCAGGCGT 3620
Score = 300 bits (332), Expect = 5e-77
Identities = 166/166 (100%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 2859 CCTTCTGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGG 2918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3602 CCTTCTGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGG 3543
Query 2919 CAGCGGATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGC 2978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3542 CAGCGGATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGC 3483
Query 2979 CCTGTTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3024
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3482 CCTGTTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3437
>seq67353
Length=817
Score = 343 bits (380), Expect = 5e-90
Identities = 190/190 (100%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 12434 AGGCCTGAAGTCCGGCTGGAGTGAGTGGGAAGAGAGCGCCACGGACAGTATGTCGCAGGT 12493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AGGCCTGAAGTCCGGCTGGAGTGAGTGGGAAGAGAGCGCCACGGACAGTATGTCGCAGGT 444
Query 12494 AAAAAGTGCAGCCACGCAGACCTTTGATGGTATTGCACAGAATATGGCGGCGATGCTGAC 12553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AAAAAGTGCAGCCACGCAGACCTTTGATGGTATTGCACAGAATATGGCGGCGATGCTGAC 384
Query 12554 CGGCAGTGAGCAGAACTGGCGCAGCTTCACCCGTTCCGTGCTGTCCATGATGACAGAAAT 12613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CGGCAGTGAGCAGAACTGGCGCAGCTTCACCCGTTCCGTGCTGTCCATGATGACAGAAAT 324
Query 12614 TCTGCTTAAG 12623
||||||||||
Sbjct 323 TCTGCTTAAG 314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154936758570048
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