Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq19165 1802 0.0 seq9614 1164 0.0 seq69273 560 3e-155 seq67353 343 5e-90 >seq19165 Length=1007 Score = 1802 bits (1998), Expect = 0.0 Identities = 999/999 (100%), Gaps = 0/999 (0%) Strand=Plus/Minus Query 29592 CGGATCTGCACAACATTGATAACGCCCAATCTTTTTGCTCAGACTCTAACTCATTGATAC 29651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 CGGATCTGCACAACATTGATAACGCCCAATCTTTTTGCTCAGACTCTAACTCATTGATAC 948 Query 29652 TCATTTATAAACTCCTTGCAATGTATGTCGTTTCAGCTAAACGGTATCAGCAATGTTTAT 29711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 TCATTTATAAACTCCTTGCAATGTATGTCGTTTCAGCTAAACGGTATCAGCAATGTTTAT 888 Query 29712 GTAAAGAAACAGTAAGATAATACTCAACCCGATGTTTGAGTACGGTCATCATCTGACACT 29771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 GTAAAGAAACAGTAAGATAATACTCAACCCGATGTTTGAGTACGGTCATCATCTGACACT 828 Query 29772 ACAGACTCTGGCATCGCTGTGAAGACGACGCGAAATTCAGCATTTTCACAAGCGTTATCT 29831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 ACAGACTCTGGCATCGCTGTGAAGACGACGCGAAATTCAGCATTTTCACAAGCGTTATCT 768 Query 29832 TTTACAAAACCGATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAG 29891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 TTTACAAAACCGATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAG 708 Query 29892 ATACTCACCTGCATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGAT 29951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 ATACTCACCTGCATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGAT 648 Query 29952 GTCGATAGTTACTAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACC 30011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 647 GTCGATAGTTACTAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACC 588 Query 30012 AGTGCAGTGCTTGATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCC 30071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 AGTGCAGTGCTTGATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCC 528 Query 30072 GTCTTCACGGACTTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAAC 30131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 527 GTCTTCACGGACTTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAAC 468 Query 30132 ACCTTCGTAATACTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACG 30191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 ACCTTCGTAATACTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACG 408 Query 30192 CAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTG 30251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 CAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTG 348 Query 30252 CTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATG 30311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 CTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATG 288 Query 30312 GAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAG 30371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 287 GAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAG 228 Query 30372 TGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCC 30431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 227 TGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCC 168 Query 30432 TCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATC 30491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 TCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATC 108 Query 30492 GGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATT 30551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 GGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATT 48 Query 30552 TTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGAT 30590 ||||||||||||||||||||||||||||||||||||||| Sbjct 47 TTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGAT 9 >seq9614 Length=652 Score = 1164 bits (1290), Expect = 0.0 Identities = 647/648 (99%), Gaps = 0/648 (0%) Strand=Plus/Minus Query 42883 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 42942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 42943 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 43002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 43003 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 43062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 43063 TCCAGACATGCTCGTTGAAGCATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 43122 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 43123 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 43182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 43183 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGAGATGCGCTATTACGAAAAAA 43242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGAGATGCGCTATTACGAAAAAA 293 Query 43243 TTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGA 43302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGA 233 Query 43303 ACCTGATGAACAAACTGGATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGG 43362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 ACCTGATGAACAAACTGGATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGG 173 Query 43363 TGGGCGATTTGGTTGATCGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCC 43422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 TGGGCGATTTGGTTGATCGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCC 113 Query 43423 CCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGC 43482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 CCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGC 53 Query 43483 GTGGAAACGTTAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 43530 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 GTGGAAACGTTAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 5 >seq69273 Length=3889 Score = 560 bits (620), Expect = 3e-155 Identities = 310/310 (100%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 2241 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 2300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 720 Query 2301 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 2360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 660 Query 2361 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 2420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 600 Query 2421 GATGGCAGGaaaaaaaTACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 2480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 540 Query 2481 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGT 2540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGT 480 Query 2541 GCGCTGCTGG 2550 |||||||||| Sbjct 479 GCGCTGCTGG 470 Score = 482 bits (534), Expect = 7e-132 Identities = 269/270 (99%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 12664 TTGGCGGGGCTGTTGGTGGCGGCGCATCCGCGTCAGGCGGTACAGCCATTCAGGCCGCTG 12723 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3889 TTAGCGGGGCTGTTGGTGGCGGCGCATCCGCGTCAGGCGGTACAGCCATTCAGGCCGCTG 3830 Query 12724 CGGCGAAATTCCATTTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAG 12783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3829 CGGCGAAATTCCATTTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAG 3770 Query 12784 CGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCG 12843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3769 CGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCG 3710 Query 12844 TGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGGTACACCGG 12903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3709 TGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGGTACACCGG 3650 Query 12904 GCAGCATGGCAGACAGCCGGTCGCAGGCGT 12933 |||||||||||||||||||||||||||||| Sbjct 3649 GCAGCATGGCAGACAGCCGGTCGCAGGCGT 3620 Score = 300 bits (332), Expect = 5e-77 Identities = 166/166 (100%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 2859 CCTTCTGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGG 2918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3602 CCTTCTGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGG 3543 Query 2919 CAGCGGATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGC 2978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3542 CAGCGGATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGC 3483 Query 2979 CCTGTTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3024 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3482 CCTGTTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3437 >seq67353 Length=817 Score = 343 bits (380), Expect = 5e-90 Identities = 190/190 (100%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 12434 AGGCCTGAAGTCCGGCTGGAGTGAGTGGGAAGAGAGCGCCACGGACAGTATGTCGCAGGT 12493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 AGGCCTGAAGTCCGGCTGGAGTGAGTGGGAAGAGAGCGCCACGGACAGTATGTCGCAGGT 444 Query 12494 AAAAAGTGCAGCCACGCAGACCTTTGATGGTATTGCACAGAATATGGCGGCGATGCTGAC 12553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 AAAAAGTGCAGCCACGCAGACCTTTGATGGTATTGCACAGAATATGGCGGCGATGCTGAC 384 Query 12554 CGGCAGTGAGCAGAACTGGCGCAGCTTCACCCGTTCCGTGCTGTCCATGATGACAGAAAT 12613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 383 CGGCAGTGAGCAGAACTGGCGCAGCTTCACCCGTTCCGTGCTGTCCATGATGACAGAAAT 324 Query 12614 TCTGCTTAAG 12623 |||||||||| Sbjct 323 TCTGCTTAAG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154936758570048