Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq69273 293 7e-75 >seq69273 Length=3889 Score = 293 bits (324), Expect = 7e-75 Identities = 239/290 (82%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 2097 GTTTATCTGACTGAGGTGGGTACTGATACCGCTAAAGAGCAGATTTATAACCGCTTCACG 2156 ||||| || || || | ||||| |||||||| |||||||||||||||||||||||||| Sbjct 779 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 720 Query 2157 CTGATTGTCGAGGGAGATGAACCTCTGGCCGGTGCCGTTCACTTCCCCAACAACCCCGAT 2216 |||| || || |||||||| || ||||||||||||||||||| || ||||| ||| Sbjct 719 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 660 Query 2217 ATTTACGATCTTTCTGAGGCGCAGCAGCTGACCGCCGAAGAGCTGGTAGAAAAGTGGGTT 2276 |||| ||||| | || |||||||||||||| || ||||||| ||| ||||| ||||| Sbjct 659 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 600 Query 2277 GATGGGAAGAGAAAAATCATATGGGACAGCAAAAAGAGGCGAAATGAGGCTCTCGACTGC 2336 ||||| | || |||||| | ||||||||||||||| | || |||||||| ||||||||| Sbjct 599 GATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 540 Query 2337 TTTGTTTACGCACTGGCGGCGCTTCGTATCAGCATATCCCGCTGGCAGCT 2386 || ||||| || ||||||||||| || ||||| || |||||||||||||| Sbjct 539 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCT 490 Score = 127 bits (140), Expect = 6e-25 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 12503 tttGCAGGTGGCGGTTATACCGGTTCAGGCGGGAAATATGAACCTGCAGGTGTCGTTCAC 12562 |||||| || || | ||| || | ||||| |||||||| || || || | |||||| Sbjct 3815 TTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCAC 3756 Query 12563 CGTGGTGAATTTGTTTTCACCAAAGAGGCTACAAACCGGATCGGCGTCGGCAATCTTTAC 12622 |||||||| ||||| ||||| || ||||| || | |||||| ||||| || ||||||||| Sbjct 3755 CGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTAC 3696 Query 12623 CGGATGATGAAAGGGTATGCCACGGGTGGGTATGTCGG 12660 ||| ||||| || |||||||| || || |||||||| Sbjct 3695 CGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGG 3658 Score = 123 bits (136), Expect = 7e-24 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 2711 TGGGACCTGACGGGAAAACATCCCTTCGGGAATACGCGGGATATCATGGAGGTGGTGGCG 2770 |||| || ||||| | ||||| || || ||||| || || ||||| || ||||| ||| Sbjct 3597 TGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGGCAGCG 3538 Query 2771 GGTTTGGTGGTCAGCTGCGAGGCTGGAATCCGCCGAGCGAAAGTGCAGATGCAGCACTCC 2830 | ||||| || ||| |||| ||||| || ||||| ||||||| |||||||| || Sbjct 3537 GATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGCCCTGT 3478 Query 2831 TTCCCAACTATTCTCGTGGAAATGCCCGCGCTGACGATCTG 2871 | ||||||| | | ||||| ||||||||||| ||||||||| Sbjct 3477 TGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148136855848884