Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 129 6e-25
seq28572 127 2e-24
seq7792 122 9e-23
seq13914 104 2e-17
seq52934 82.4 8e-11
>seq63578
Length=26733
Score = 129 bits (142), Expect = 6e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||| ||||||||||| || ||||| ||||| | || |||||| | |
Sbjct 12277 AATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATC 12218
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | ||| | || | |||||| | || ||||| || ||||| | |||||
Sbjct 12217 TGACACAATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCCGACCA 12158
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||| || | || | ||| || ||||| | || || | || || | | |||||||||
Sbjct 12157 GCAAAGATTAATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGACTACAA 12098
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||| ||||| ||| | ||||||||| |||| |||||
Sbjct 12097 CATTCAGAAAGAGTCTACGCTGCATTTAGTTTTGCG 12062
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||||||||| || |||||||| ||| | || || ||| | ||
Sbjct 11820 ATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCC 11761
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | ||| |||| | ||||||| || ||||| ||||| || | ||||||
Sbjct 11760 GATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAG 11701
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | |||| || || |||||| |||| || | || || || | || || |||
Sbjct 11700 CAACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAAC 11641
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||| || |||| || ||
Sbjct 11640 ATTCAGAAAGAATCCACTCTTCA 11618
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
|||||||| ||||||||||||||||| || ||||| ||||| | || || | ||||| |
Sbjct 12048 ATGCAAATTTTCGTAAAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAG-AGCCATC 11990
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | | | | || | || |||| |||||||| || || || | |||||
Sbjct 11989 CGATACAATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCCGACCA 11930
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||| | || | ||| || ||||| |||| |||| ||||| | | ||| |||||
Sbjct 11929 GCAGCGATTAATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAA 11870
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| ||||| |||| || ||| | || || ||
Sbjct 11869 TATCCAAAAGGAATCCACCCTACATTTGGTCTTACG 11834
Score = 98.7 bits (108), Expect = 1e-15
Identities = 148/208 (71%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| |||||||| ||||||||||| || || || |||||||| || | || || ||| |
Sbjct 12735 AAGATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCA 12676
Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||| | | | ||||| |||| | || |||| || ||||| || ||||| | ||
Sbjct 12675 TCCGATACGATCGAAAACG-TCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGA 12617
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||||||| | || | || || ||||| |||| || | ||||| | | ||||||
Sbjct 12616 CCAGCAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTA 12557
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893
||| || || || || | ||||| |||
Sbjct 12556 CAATATTCAAAAAGAATCGACGCTTCAT 12529
>seq28572
Length=14732
Score = 127 bits (140), Expect = 2e-24
Identities = 145/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||||||||| | || |||||||||||||| |||| ||||| | | |
Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || ||||| |||||| |||||||| || ||||| |||||||| |||||||
Sbjct 3139 GACACGATTGAAAACG-TCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCA 3081
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || || | ||| || ||||| || || || | | || || ||||| ||
Sbjct 3080 GCAACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATAA 3021
Query 40869 CATCCAGAAGGA 40880
|||||| || ||
Sbjct 3020 CATCCAAAAAGA 3009
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| || ||||| ||||||||||| |||| || || |||
Sbjct 2287 ATGCAAATCTTCGTTAAAACCCTAACGGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2228
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | ||||| |||||| ||||| | || || || || || ||| | || ||
Sbjct 2227 GACACCATCGAAAACG-TCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCCCCAGATCA 2169
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||||| | || | || |||||||| || || || | || |||||| ||| |||||
Sbjct 2168 ACAACGTTTAATTTTTGCCGGCAAACAACTCGAAGATGGCCGAACCCTCTCCGATTACAA 2109
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || ||||| | || | ||||| ||| | || ||||| || ||
Sbjct 2108 TATTCAAAAGGAATCAACTTTACATCTCGTGCTTCGATTGAGAGGAGG 2061
Score = 113 bits (124), Expect = 5e-20
Identities = 168/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 40682 TCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741
|| |||||||||| || |||||||||||| | || || |||||||||||| |||| || |
Sbjct 3435 TCAGAAAAATGCAGATCTTCGTAAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTTG 3376
Query 40742 AAGCCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800
|| | | || | | | ||||| |||||| ||||||| || || || || || ||
Sbjct 3375 AACCGAGTGATACGATCGAAAACG-TCAAGGCGAAAATTCAAGATAAGGAAGGTATTCCT 3317
Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860
| || || ||||| || |||| ||| || || || || || |||| || || || |
Sbjct 3316 CCTGATCAACAACGTCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGAACGCTTTCC 3257
Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| ||||| ||||| ||||| | || | ||| | || | || ||||| || ||
Sbjct 3256 GATTACAATATCCAAAAGGAATCGACTTTACATTTGGTTCTTCGATTGAGAGGTGG 3201
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| | || || ||||| |||||| |||| ||||| | |
Sbjct 2059 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGT 2000
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | ||| |||||| ||||| | || || ||||| || || | ||||||
Sbjct 1999 GACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAG 1940
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||| | ||| || ||||| || || |||| | || ||| || || ||
Sbjct 1939 CAACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAAT 1880
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || || | || || ||| |||| | || ||||| |||||
Sbjct 1879 ATTCAAAAAGAATCGACTCTTCATTTAGTCCTCCGATTGAGAGGCGG 1833
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| | || || ||||||||||| |||| || || |||
Sbjct 2743 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2684
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| ||||||| || || ||||| || ||| | || ||
Sbjct 2683 GACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAA 2624
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | || | ||| || ||||| || || |||| || || || ||| ||||||
Sbjct 2623 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAAC 2564
Query 40870 ATCCAGAAGGA 40880
||||| || ||
Sbjct 2563 ATCCAAAAAGA 2553
>seq7792
Length=27931
Score = 122 bits (134), Expect = 9e-23
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005
|||| || || || || || ||||| || || || |||| || || |||||| || |
Sbjct 19396 TGTTCAATGCTATTGAAACAATGCCTTGTGTTAAGAAGAAAGCAGACTGGGCGTTGAAAT 19337
Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065
|||| || | | | | || | || || || | | | || || || |||||||| |
Sbjct 19336 GGATAGCTGATAAAAATGCTACTTTTGGAGAAAGGATCATAGCGTTTGCTGCCGTCGAAG 19277
Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125
|| |||||||||| || ||||| || || ||||||||||| || || || ||||| ||||
Sbjct 19276 GCATCTTCTTTTCAGGAAGTTTTGCTGCAATATTTTGGCTTAAAAAGCGAGGCCTAATGC 19217
Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165
| || |||||||||| ||||| | || || ||||||||
Sbjct 19216 CTGGATTGACTTTCAGTAACGAATTAATATCAAGGGACGA 19177
Score = 104 bits (114), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803
||||| |||||| || || ||||||||||| ||||| ||||| || || ||| |
Sbjct 19667 TTCATTTCGCACGTTCTTGCATTTTTCGCCGCATCTGACGGTATCGTGAATGAAAATTTA 19608
Query 116804 GTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863
|||||||| ||| ||| || || || | |||| || | | ||||||||| ||||||
Sbjct 19607 GTCGAGCGCTTCTTTCAAGAAGTTCAAATCCCCGAAGCTAGATTCTTCTACGGATTTCAG 19548
Query 116864 ATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
||| |||| ||||| || || || ||||||||
Sbjct 19547 ATCACCATAGAGAATGTTCATTCAGAAATGTA 19516
>seq13914
Length=11729
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG-GCCGAGTGGGCGCTGCGCTG 117006
|| || ||||| || || |||||||| || || ||||| || || |||||| || ||
Sbjct 8105 TTCAATGCCATTGAAACCATGCCGTGTGTTAA-GAGAAAAGCTGACTGGGCGTTGAAGTG 8047
Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066
||| | || | | || | || || || | | | || || || || ||||| ||
Sbjct 8046 GATAAATGACAAAAACGCGACTTTTGGAGAAAGAATCATAGCTTTTGCTGCTGTCGAAGG 7987
Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126
| |||||||| || ||||| || || ||||||||||| || ||| | ||||| |||||
Sbjct 7986 TATTTTCTTTTCTGGAAGTTTTGCTGCGATATTTTGGCTTAAAAAAAGGGGCCTAATGCC 7927
Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165
|| |||||||||||||| || | || || || |||||
Sbjct 7926 TGGACTGACTTTCAGCAATGAATTAATATCAAGAGACGA 7888
>seq52934
Length=6696
Score = 82.4 bits (90), Expect = 8e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || ||||| ||||| ||||| |||| |||||| | |
Sbjct 4155 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCG 4096
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | || | ||||||| || ||||| || ||||| | ||||||
Sbjct 4095 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAG 4036
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| ||| || || || |||| || | | || || ||| |||||
Sbjct 4035 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAAT 3976
Query 40870 ATCCAGAA 40877
||||| ||
Sbjct 3975 ATCCAAAA 3968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514701494867360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |