Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq63578 129 6e-25 seq28572 127 2e-24 seq7792 122 9e-23 seq13914 104 2e-17 seq52934 82.4 8e-11 >seq63578 Length=26733 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||||||||| || ||||| ||||| | || |||||| | | Sbjct 12277 AATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATC 12218 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | || | |||||| | || ||||| || ||||| | ||||| Sbjct 12217 TGACACAATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCCGACCA 12158 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | || | ||| || ||||| | || || | || || | | ||||||||| Sbjct 12157 GCAAAGATTAATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGACTACAA 12098 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| ||| | ||||||||| |||| ||||| Sbjct 12097 CATTCAGAAAGAGTCTACGCTGCATTTAGTTTTGCG 12062 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||||||||| || |||||||| ||| | || || ||| | || Sbjct 11820 ATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCC 11761 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | ||||||| || ||||| ||||| || | |||||| Sbjct 11760 GATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAG 11701 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| || || |||||| |||| || | || || || | || || ||| Sbjct 11700 CAACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAAC 11641 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| || |||| || || Sbjct 11640 ATTCAGAAAGAATCCACTCTTCA 11618 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 |||||||| ||||||||||||||||| || ||||| ||||| | || || | ||||| | Sbjct 12048 ATGCAAATTTTCGTAAAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAG-AGCCATC 11990 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | || | || |||| |||||||| || || || | ||||| Sbjct 11989 CGATACAATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCCGACCA 11930 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||| || ||||| |||| |||| ||||| | | ||| ||||| Sbjct 11929 GCAGCGATTAATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAA 11870 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| |||| || ||| | || || || Sbjct 11869 TATCCAAAAGGAATCCACCCTACATTTGGTCTTACG 11834 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||||||||| || || || |||||||| || | || || ||| | Sbjct 12735 AAGATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCA 12676 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | ||||| |||| | || |||| || ||||| || ||||| | || Sbjct 12675 TCCGATACGATCGAAAACG-TCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGA 12617 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| | || | || || ||||| |||| || | ||||| | | |||||| Sbjct 12616 CCAGCAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTA 12557 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||| || || || || | ||||| ||| Sbjct 12556 CAATATTCAAAAAGAATCGACGCTTCAT 12529 >seq28572 Length=14732 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| | || |||||||||||||| |||| ||||| | | | Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| |||||| |||||||| || ||||| |||||||| ||||||| Sbjct 3139 GACACGATTGAAAACG-TCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCA 3081 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| || ||||| || || || | | || || ||||| || Sbjct 3080 GCAACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATAA 3021 Query 40869 CATCCAGAAGGA 40880 |||||| || || Sbjct 3020 CATCCAAAAAGA 3009 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || ||||| ||||||||||| |||| || || ||| Sbjct 2287 ATGCAAATCTTCGTTAAAACCCTAACGGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2228 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||| | || || || || || ||| | || || Sbjct 2227 GACACCATCGAAAACG-TCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCCCCAGATCA 2169 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | || |||||||| || || || | || |||||| ||| ||||| Sbjct 2168 ACAACGTTTAATTTTTGCCGGCAAACAACTCGAAGATGGCCGAACCCTCTCCGATTACAA 2109 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || ||||| | || | ||||| ||| | || ||||| || || Sbjct 2108 TATTCAAAAGGAATCAACTTTACATCTCGTGCTTCGATTGAGAGGAGG 2061 Score = 113 bits (124), Expect = 5e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 40682 TCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 || |||||||||| || |||||||||||| | || || |||||||||||| |||| || | Sbjct 3435 TCAGAAAAATGCAGATCTTCGTAAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTTG 3376 Query 40742 AAGCCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 || | | || | | | ||||| |||||| ||||||| || || || || || || Sbjct 3375 AACCGAGTGATACGATCGAAAACG-TCAAGGCGAAAATTCAAGATAAGGAAGGTATTCCT 3317 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 | || || ||||| || |||| ||| || || || || || |||| || || || | Sbjct 3316 CCTGATCAACAACGTCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGAACGCTTTCC 3257 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||||| ||||| | || | ||| | || | || ||||| || || Sbjct 3256 GATTACAATATCCAAAAGGAATCGACTTTACATTTGGTTCTTCGATTGAGAGGTGG 3201 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||| |||||| |||| ||||| | | Sbjct 2059 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGT 2000 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| ||||| | || || ||||| || || | |||||| Sbjct 1999 GACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAG 1940 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| || || |||| | || ||| || || || Sbjct 1939 CAACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAAT 1880 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || | || || ||| |||| | || ||||| ||||| Sbjct 1879 ATTCAAAAAGAATCGACTCTTCATTTAGTCCTCCGATTGAGAGGCGG 1833 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || ||||||||||| |||| || || ||| Sbjct 2743 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2684 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| ||||||| || || ||||| || ||| | || || Sbjct 2683 GACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAA 2624 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| || ||||| || || |||| || || || ||| |||||| Sbjct 2623 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAAC 2564 Query 40870 ATCCAGAAGGA 40880 ||||| || || Sbjct 2563 ATCCAAAAAGA 2553 >seq7792 Length=27931 Score = 122 bits (134), Expect = 9e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || || || || || ||||| || || || |||| || || |||||| || | Sbjct 19396 TGTTCAATGCTATTGAAACAATGCCTTGTGTTAAGAAGAAAGCAGACTGGGCGTTGAAAT 19337 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| || | | | | || | || || || | | | || || || |||||||| | Sbjct 19336 GGATAGCTGATAAAAATGCTACTTTTGGAGAAAGGATCATAGCGTTTGCTGCCGTCGAAG 19277 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || |||||||||| || ||||| || || ||||||||||| || || || ||||| |||| Sbjct 19276 GCATCTTCTTTTCAGGAAGTTTTGCTGCAATATTTTGGCTTAAAAAGCGAGGCCTAATGC 19217 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 | || |||||||||| ||||| | || || |||||||| Sbjct 19216 CTGGATTGACTTTCAGTAACGAATTAATATCAAGGGACGA 19177 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| |||||| || || ||||||||||| ||||| ||||| || || ||| | Sbjct 19667 TTCATTTCGCACGTTCTTGCATTTTTCGCCGCATCTGACGGTATCGTGAATGAAAATTTA 19608 Query 116804 GTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863 |||||||| ||| ||| || || || | |||| || | | ||||||||| |||||| Sbjct 19607 GTCGAGCGCTTCTTTCAAGAAGTTCAAATCCCCGAAGCTAGATTCTTCTACGGATTTCAG 19548 Query 116864 ATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| |||| ||||| || || || |||||||| Sbjct 19547 ATCACCATAGAGAATGTTCATTCAGAAATGTA 19516 >seq13914 Length=11729 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG-GCCGAGTGGGCGCTGCGCTG 117006 || || ||||| || || |||||||| || || ||||| || || |||||| || || Sbjct 8105 TTCAATGCCATTGAAACCATGCCGTGTGTTAA-GAGAAAAGCTGACTGGGCGTTGAAGTG 8047 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| | || | | || | || || || | | | || || || || ||||| || Sbjct 8046 GATAAATGACAAAAACGCGACTTTTGGAGAAAGAATCATAGCTTTTGCTGCTGTCGAAGG 7987 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | |||||||| || ||||| || || ||||||||||| || ||| | ||||| ||||| Sbjct 7986 TATTTTCTTTTCTGGAAGTTTTGCTGCGATATTTTGGCTTAAAAAAAGGGGCCTAATGCC 7927 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 || |||||||||||||| || | || || || ||||| Sbjct 7926 TGGACTGACTTTCAGCAATGAATTAATATCAAGAGACGA 7888 >seq52934 Length=6696 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || ||||| ||||| ||||| |||| |||||| | | Sbjct 4155 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCG 4096 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | ||||||| || ||||| || ||||| | |||||| Sbjct 4095 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAG 4036 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || || |||| || | | || || ||| ||||| Sbjct 4035 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAAT 3976 Query 40870 ATCCAGAA 40877 ||||| || Sbjct 3975 ATCCAAAA 3968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514701494867360