Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq54470 134 1e-26 >seq54470 Length=54847 Score = 134 bits (148), Expect = 1e-26 Identities = 240/345 (70%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 97113 ATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCAC 97172 || ||| ||||| |||||||| |||| | ||| || || || || || |||||||| || Sbjct 48372 ATTAGTAACATGTGCGATCATGTAAGTGAGTAGGGAGTAACTGGCGATATTAAAAGGTAC 48431 Query 97173 CCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACA- 97231 |||| |||||||| || || | |||||| | ||||| || | | |||| | ||| Sbjct 48432 TCCTAAACCCATATCGGCAGAACGTTGATACATTTGACACGATAATTCGCCATTA-ACAG 48490 Query 97232 CATAAAACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 | |||||||| | | | ||| ||||| || || | ||||| || || | |||||| | Sbjct 48491 CGTAAAACTG-CACTAAACAGTGACAAGGAGGTAGGGCCATCTTGGGTAAATCTAACGGA 48549 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 |||||||| || | | |||||||||||| ||||| | | ||||||| ||| | Sbjct 48550 TTCCAAGCGCATAAAATTATTCTTCTATCGTCGGGGTTATTTTTAATGGTATCAATGACA 48609 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | | | |||||| | ||||| |||| | | | | ||| || || ||| Sbjct 48610 TTTTGCAGTTGATCGATGCCTTTGTTGGAGTAATCGGCGTGCATATCTTTGTACTCAGCT 48669 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 || || || |||||||||||||| ||||| || || || || ||| Sbjct 48670 CCGAAGTGTCTCCATTGGAATCCGTAAACTGGACCGAGATCGCCT 48714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346444254198020