Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 111 1e-19
seq28572 111 1e-19
seq13914 82.4 7e-11
>seq63578
Length=26733
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || |||| | ||| || || || | ||||||||||| ||||||||||| ||||
Sbjct 12048 TACCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGC 12107
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| ||| || ||| || | ||||| || ||| | || | | ||||| ||||| |
Sbjct 12108 TCAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTG 12167
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688
| || || || || ||| |||||| ||| || | ||||| ||||| | || | |||
Sbjct 12168 GGATACCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGT-TCG 12226
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || | || | ||||| || || || ||||| || ||||| |||||
Sbjct 12227 ACTTCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 12276
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| ||||| | | || ||||| || | || || || ||||| || ||||||||||
Sbjct 11820 TACCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGC 11879
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| | ||||| || || | ||||| || ||| | || | |||||||| ||||| |
Sbjct 11880 TTAACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTG 11939
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || || |||||| ||| || |||||| | |||| || || | ||| |
Sbjct 11940 GAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTA 11999
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || | ||||| ||||| || |||||||| ||||| |||||
Sbjct 12000 CTTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || || ||||||||||| ||||| ||||||| ||||| ||| ||
Sbjct 12524 ACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCTTCC 12583
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
| ||||| || || | || | || ||||| || || || || || || || ||| |
Sbjct 12584 AATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGA 12643
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||| || | ||||| || || | || | || || || | || | |||||
Sbjct 12644 ATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGT-TCAACTTCCAAAGTAATGGTTTT 12702
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||||||||| || || |||||
Sbjct 12703 TCCGGTAAGAGTTTTTACGAAGATTTGCAT 12732
>seq28572
Length=14732
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | ||| || |||||||| |||||||||||| | ||| || || |||
Sbjct 2535 ACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCG 2594
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| ||||| || ||| | || | ||| || ||||| || || || |||||||| || |
Sbjct 2595 AGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTGA 2654
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
||||| || || | ||||| |||||| || ||| || |||| || | |||||
Sbjct 2655 ATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTA 2714
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || | ||||| || |||||||||||
Sbjct 2715 CCAGTTAAGGTTTTGACGAAAATCTGCAT 2743
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| || || | || ||||||||| || | || |||||||| || || ||||||||
Sbjct 1605 CCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAA 1664
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| | ||| || ||||| ||||| ||| | || | ||| ||||||||||||||
Sbjct 1665 AGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGG 1724
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| || || |||||| || || || || | ||||| |||||| | |||||
Sbjct 1725 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACT 1784
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| || | |||||| ||||||| || || || || || |||||
Sbjct 1785 TCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || ||||||||||| || ||||| | ||| | || ||||| ||||||||
Sbjct 1863 GTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 1922
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | |||||||| ||||| || ||||| || |||||||| ||| ||||| ||
Sbjct 1923 GCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATTTTGGCCTTG 1982
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | ||||| ||||| | |||||| |||| ||| | ||||| || || | |||
Sbjct 1983 ACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTTTTACCTGTTAAGGTT 2042
Query 118722 TTTACAAAAATCTGCAT 118738
|| || ||||| |||||
Sbjct 2043 TTGACGAAAATTTGCAT 2059
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|| || || | ||| || |||||||| ||||| || || | ||| | ||| |||
Sbjct 2307 ACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCG 2366
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| ||||| ||||| |||| ||||| |||||||| || || || |||||||| ||| |
Sbjct 2367 AGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGA 2426
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
||||| || || | ||||| ||||| | ||||||||||| || | |||||
Sbjct 2427 ATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTA 2486
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || | || || || ||||| |||||
Sbjct 2487 CCAGTTAAGGTCTTGACGAAAATTTGCAT 2515
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | ||||| |||||||| ||||| || || | || | ||| |||
Sbjct 2991 ACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCG 3050
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| ||||| || ||| | || ||||| ||||| || ||||| ||||| || || || |
Sbjct 3051 AGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGA 3110
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|||||| || || | ||| | ||||| | |||||| |||| || | ||||||
Sbjct 3111 ATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTG 3170
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | |||||||| || ||||||||
Sbjct 3171 CCGGTTAAGGTTTTTACGAAGATCTGCAT 3199
>seq13914
Length=11729
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 45207 AGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAA 45266
|| ||| | || || ||||||||||||| |||||| | ||||| || | | || ||||
Sbjct 7508 AGTTGTTCAATTCTCAGAACCCATTCGATTTTATGGAAAATATATCTCTAAACGGTAAAA 7449
Query 45267 CTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301
| ||||| ||||||||| | || ||||||||||||
Sbjct 7448 CGAATTTCTTTGAGAAAAGAGTAGGCGAATACAAG 7414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433405374459112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |