Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq63578 111 1e-19 seq28572 111 1e-19 seq13914 82.4 7e-11 >seq63578 Length=26733 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || |||| | ||| || || || | ||||||||||| ||||||||||| |||| Sbjct 12048 TACCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGC 12107 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||| || ||| || | ||||| || ||| | || | | ||||| ||||| | Sbjct 12108 TCAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTG 12167 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| |||||| ||| || | ||||| ||||| | || | ||| Sbjct 12168 GGATACCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGT-TCG 12226 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || ||||| || ||||| ||||| Sbjct 12227 ACTTCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 12276 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || ||||| || | || || || ||||| || |||||||||| Sbjct 11820 TACCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGC 11879 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | ||||| || || | ||||| || ||| | || | |||||||| ||||| | Sbjct 11880 TTAACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTG 11939 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||| || |||||| | |||| || || | ||| | Sbjct 11940 GAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTA 11999 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| ||||| || |||||||| ||||| ||||| Sbjct 12000 CTTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||||||||| ||||| ||||||| ||||| ||| || Sbjct 12524 ACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCTTCC 12583 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || || | || | || ||||| || || || || || || || ||| | Sbjct 12584 AATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGA 12643 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||||| || || | || | || || || | || | ||||| Sbjct 12644 ATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGT-TCAACTTCCAAAGTAATGGTTTT 12702 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||||||||| || || ||||| Sbjct 12703 TCCGGTAAGAGTTTTTACGAAGATTTGCAT 12732 >seq28572 Length=14732 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||| || |||||||| |||||||||||| | ||| || || ||| Sbjct 2535 ACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCG 2594 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || ||| | || | ||| || ||||| || || || |||||||| || | Sbjct 2595 AGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTGA 2654 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| |||||| || ||| || |||| || | ||||| Sbjct 2655 ATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTA 2714 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| || ||||||||||| Sbjct 2715 CCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | || ||||||||| || | || |||||||| || || |||||||| Sbjct 1605 CCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAA 1664 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || ||||| ||||| ||| | || | ||| |||||||||||||| Sbjct 1665 AGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGG 1724 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || |||||| || || || || | ||||| |||||| | ||||| Sbjct 1725 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACT 1784 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | |||||| ||||||| || || || || || ||||| Sbjct 1785 TCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| || ||||| | ||| | || ||||| |||||||| Sbjct 1863 GTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 1922 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||| ||||| || ||||| || |||||||| ||| ||||| || Sbjct 1923 GCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATTTTGGCCTTG 1982 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | |||||| |||| ||| | ||||| || || | ||| Sbjct 1983 ACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTTTTACCTGTTAAGGTT 2042 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||| ||||| Sbjct 2043 TTGACGAAAATTTGCAT 2059 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || || | ||| || |||||||| ||||| || || | ||| | ||| ||| Sbjct 2307 ACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCG 2366 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| ||||| |||| ||||| |||||||| || || || |||||||| ||| | Sbjct 2367 AGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGA 2426 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| ||||| | ||||||||||| || | ||||| Sbjct 2427 ATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTA 2486 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || || || ||||| ||||| Sbjct 2487 CCAGTTAAGGTCTTGACGAAAATTTGCAT 2515 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| |||||||| ||||| || || | || | ||| ||| Sbjct 2991 ACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCG 3050 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || ||| | || ||||| ||||| || ||||| ||||| || || || | Sbjct 3051 AGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGA 3110 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| || || | ||| | ||||| | |||||| |||| || | |||||| Sbjct 3111 ATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTG 3170 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | |||||||| || |||||||| Sbjct 3171 CCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 >seq13914 Length=11729 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 45207 AGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAA 45266 || ||| | || || ||||||||||||| |||||| | ||||| || | | || |||| Sbjct 7508 AGTTGTTCAATTCTCAGAACCCATTCGATTTTATGGAAAATATATCTCTAAACGGTAAAA 7449 Query 45267 CTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 | ||||| ||||||||| | || |||||||||||| Sbjct 7448 CGAATTTCTTTGAGAAAAGAGTAGGCGAATACAAG 7414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433405374459112